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  5. LOC_Os02g06640.1

LOC_Os02g06640.1 (UBQ10, LOC_Os02g06640)


Aliases : UBQ10, LOC_Os02g06640

Description : ubiquitin-fold protein (UBQ)


Gene families : OG0000054 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g06640.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00094950 UBQ6,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
AT5G03240 UBQ3 polyubiquitin 3 0.05 OrthoFinder output from all 47 species
Aev_g13089 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g25753 UBQ14 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g40141 UBQ10 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g22856 UBQ6 component *(eS31) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ala_g31252 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Als_g49627 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g10329 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Cba_g15004 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021318.73 UBQ10 Protein degradation.peptide tagging.Ubiquitin... 0.01 OrthoFinder output from all 47 species
Cre07.g322100 No alias No description available 0.02 OrthoFinder output from all 47 species
Dde_g08812 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Dde_g11820 UBQ6 component *(eS31) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Gb_28672 RUB1, ATRUB1, NEDD8 ubiquitin-fold protein (RUB) 0.03 OrthoFinder output from all 47 species
Lfl_g22645 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g23365 UBQ6 component *(eS31) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Lfl_g23519 UBQ14 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Mp8g00780.1 No alias component RPL40 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Msp_g18242 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g47816 UBQ6 component *(eS31) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Solyc11g005650.1.1 Solyc11g005650 Ubiquitin-60S ribosomal protein L40 OS=Brassica rapa... 0.04 OrthoFinder output from all 47 species
Spa_g08748 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g53872 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g56403 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g17741 UBQ11 UBQ ubiquiTin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g22845 UBQ11 UBQ ubiquiTin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e034164_P001 RUB1, ATRUB1,... ubiquitin-fold protein (RUB) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0004455 ketol-acid reductoisomerase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009081 branched-chain amino acid metabolic process IEP HCCA
BP GO:0009082 branched-chain amino acid biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0017025 TBP-class protein binding IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0140296 general transcription initiation factor binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000626 Ubiquitin-like_dom 155 226
IPR000626 Ubiquitin-like_dom 3 74
IPR000626 Ubiquitin-like_dom 383 454
IPR000626 Ubiquitin-like_dom 231 302
IPR000626 Ubiquitin-like_dom 79 150
IPR000626 Ubiquitin-like_dom 307 378
No external refs found!