Aliases : LOC_Os02g06500
Description : RNA helicase component SKI2 of SUPERKILLER (SKI) regulation complex
Gene families : OG0000709 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000709_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00025p00200390 | HEN2,... | RNA processing.RNA decay.exosome complex.associated... | 0.02 | OrthoFinder output from all 47 species | |
AMTR_s00029p00206820 | evm_27.TU.AmTr_v1... | RNA processing.RNA decay.exosome complex.associated... | 0.04 | OrthoFinder output from all 47 species | |
AT1G59760 | No alias | RNA helicase, ATP-dependent, SK12/DOB1 protein | 0.03 | OrthoFinder output from all 47 species | |
AT2G06990 | HEN2 | RNA helicase, ATP-dependent, SK12/DOB1 protein | 0.07 | OrthoFinder output from all 47 species | |
AT3G46960 | No alias | RNA helicase, ATP-dependent, SK12/DOB1 protein | 0.03 | OrthoFinder output from all 47 species | |
Adi_g022453 | HEN2 | RNA helicase component *(HEN2) of Nuclear Exosome... | 0.03 | OrthoFinder output from all 47 species | |
Aev_g01540 | No alias | RNA helicase component *(MTR4) of TRAMP nucleolar... | 0.02 | OrthoFinder output from all 47 species | |
Aev_g05538 | No alias | RNA helicase component *(SKI2) of SUPERKILLER regulation... | 0.03 | OrthoFinder output from all 47 species | |
Aev_g17654 | HEN2 | RNA helicase component *(HEN2) of Nuclear Exosome... | 0.02 | OrthoFinder output from all 47 species | |
Ala_g07168 | No alias | group-II intron splicing RNA helicase *(ISE2) & original... | 0.03 | OrthoFinder output from all 47 species | |
Ala_g07737 | No alias | RNA helicase component *(SKI2) of SUPERKILLER regulation... | 0.03 | OrthoFinder output from all 47 species | |
Als_g01202 | No alias | RNA helicase component *(SKI2) of SUPERKILLER regulation... | 0.03 | OrthoFinder output from all 47 species | |
Aob_g12480 | No alias | RNA helicase component *(SKI2) of SUPERKILLER regulation... | 0.02 | OrthoFinder output from all 47 species | |
Aop_g09338 | No alias | RNA helicase component *(SKI2) of SUPERKILLER regulation... | 0.03 | OrthoFinder output from all 47 species | |
Aop_g27842 | HEN2 | RNA helicase component *(HEN2) of Nuclear Exosome... | 0.02 | OrthoFinder output from all 47 species | |
Aspi01Gene40704.t1 | Aspi01Gene40704 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Aspi01Gene63032.t1 | Aspi01Gene63032 | RNA helicase component *(SKI2) of SUPERKILLER regulation... | 0.03 | OrthoFinder output from all 47 species | |
Azfi_s0027.g023708 | HEN2 | RNA helicase component *(HEN2) of Nuclear Exosome... | 0.03 | OrthoFinder output from all 47 species | |
Ceric.08G061100.1 | HEN2, Ceric.08G061100 | RNA helicase component *(SKI2) of SUPERKILLER regulation... | 0.06 | OrthoFinder output from all 47 species | |
Ceric.15G051600.1 | Ceric.15G051600 | RNA helicase component *(SKI2) of SUPERKILLER regulation... | 0.06 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00020723.108 | No alias | RNA processing.RNA decay.exosome complex.associated... | 0.01 | OrthoFinder output from all 47 species | |
Cre02.g117900 | No alias | RNA processing.RNA decay.exosome complex.associated... | 0.03 | OrthoFinder output from all 47 species | |
Cre06.g289950 | HEN2 | RNA processing.RNA decay.exosome complex.associated... | 0.02 | OrthoFinder output from all 47 species | |
Cre11.g482483 | No alias | RNA processing.RNA decay.exosome complex.associated... | 0.05 | OrthoFinder output from all 47 species | |
Dac_g23858 | No alias | RNA helicase component *(MTR4) of TRAMP nucleolar... | 0.03 | OrthoFinder output from all 47 species | |
Dcu_g12374 | No alias | RNA helicase component *(SKI2) of SUPERKILLER regulation... | 0.02 | OrthoFinder output from all 47 species | |
Dcu_g18967 | HEN2 | RNA helicase component *(HEN2) of Nuclear Exosome... | 0.02 | OrthoFinder output from all 47 species | |
Dde_g30301 | HEN2 | RNA helicase component *(HEN2) of Nuclear Exosome... | 0.02 | OrthoFinder output from all 47 species | |
Dde_g31250 | No alias | RNA helicase component *(SKI2) of SUPERKILLER regulation... | 0.04 | OrthoFinder output from all 47 species | |
Ehy_g01701 | No alias | RNA helicase component *(SKI2) of SUPERKILLER regulation... | 0.03 | OrthoFinder output from all 47 species | |
Ehy_g14599 | HEN2 | RNA helicase component *(HEN2) of Nuclear Exosome... | 0.03 | OrthoFinder output from all 47 species | |
Ehy_g24206 | No alias | RNA helicase component *(MTR4) of TRAMP nucleolar... | 0.02 | OrthoFinder output from all 47 species | |
GSVIVT01024809001 | No alias | RNA processing.RNA decay.exosome complex.associated... | 0.04 | OrthoFinder output from all 47 species | |
GSVIVT01032255001 | HEN2 | RNA processing.RNA decay.exosome complex.associated... | 0.05 | OrthoFinder output from all 47 species | |
GSVIVT01037437001 | No alias | RNA processing.RNA decay.exosome complex.associated... | 0.05 | OrthoFinder output from all 47 species | |
Len_g22463 | No alias | RNA helicase component *(MTR4) of TRAMP nucleolar... | 0.05 | OrthoFinder output from all 47 species | |
Len_g58854 | HEN2 | RNA helicase component *(HEN2) of Nuclear Exosome... | 0.04 | OrthoFinder output from all 47 species | |
Lfl_g02309 | HEN2 | RNA helicase component *(HEN2) of Nuclear Exosome... | 0.04 | OrthoFinder output from all 47 species | |
Lfl_g38626 | No alias | RNA helicase component *(SKI2) of SUPERKILLER regulation... | 0.03 | OrthoFinder output from all 47 species | |
MA_10437094g0010 | No alias | DExH-box ATP-dependent RNA helicase DExH11... | 0.06 | OrthoFinder output from all 47 species | |
MA_10437134g0010 | No alias | DExH-box ATP-dependent RNA helicase DExH11... | 0.04 | OrthoFinder output from all 47 species | |
MA_167255g0020 | HEN2 | DExH-box ATP-dependent RNA helicase DExH10... | 0.02 | OrthoFinder output from all 47 species | |
Mp1g05510.1 | No alias | RNA helicase component SKI2 of SUPERKILLER (SKI)... | 0.03 | OrthoFinder output from all 47 species | |
Mp4g03900.1 | HEN2 | RNA helicase component MTR4/HEN2 of Nuclear Exosome... | 0.03 | OrthoFinder output from all 47 species | |
Mp6g05580.1 | No alias | RNA helicase component MTR4/HEN2 of Nuclear Exosome... | 0.03 | OrthoFinder output from all 47 species | |
Msp_g15177 | HEN2 | RNA helicase component *(HEN2) of Nuclear Exosome... | 0.05 | OrthoFinder output from all 47 species | |
Nbi_g03153 | HEN2 | RNA helicase component *(HEN2) of Nuclear Exosome... | 0.02 | OrthoFinder output from all 47 species | |
Ore_g15707 | No alias | RNA helicase component *(MTR4) of TRAMP nucleolar... | 0.02 | OrthoFinder output from all 47 species | |
Ore_g17493 | No alias | RNA helicase component *(SKI2) of SUPERKILLER regulation... | 0.03 | OrthoFinder output from all 47 species | |
Ore_g41022 | HEN2 | RNA helicase component *(HEN2) of Nuclear Exosome... | 0.03 | OrthoFinder output from all 47 species | |
Pir_g18687 | HEN2 | RNA helicase component *(HEN2) of Nuclear Exosome... | 0.03 | OrthoFinder output from all 47 species | |
Ppi_g57471 | HEN2 | RNA helicase component *(HEN2) of Nuclear Exosome... | 0.03 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0205.g025703 | No alias | RNA helicase component *(SKI2) of SUPERKILLER regulation... | 0.03 | OrthoFinder output from all 47 species | |
Sam_g10538 | No alias | RNA helicase component *(HEN2) of Nuclear Exosome... | 0.02 | OrthoFinder output from all 47 species | |
Sam_g10573 | No alias | RNA helicase component *(MTR4) of TRAMP nucleolar... | 0.02 | OrthoFinder output from all 47 species | |
Sam_g14012 | No alias | RNA helicase component *(SKI2) of SUPERKILLER regulation... | 0.04 | OrthoFinder output from all 47 species | |
Smo403447 | No alias | RNA processing.RNA decay.exosome complex.associated... | 0.03 | OrthoFinder output from all 47 species | |
Solyc01g103080.3.1 | Solyc01g103080 | RNA helicase component MTR4/HEN2 of Nuclear Exosome... | 0.05 | OrthoFinder output from all 47 species | |
Solyc05g047520.4.1 | HEN2, Solyc05g047520 | RNA helicase component MTR4/HEN2 of Nuclear Exosome... | 0.08 | OrthoFinder output from all 47 species | |
Solyc06g005990.4.1 | Solyc06g005990 | DExH-box ATP-dependent RNA helicase DExH11... | 0.07 | OrthoFinder output from all 47 species | |
Solyc12g017860.3.1 | HEN2, Solyc12g017860 | RNA helicase component MTR4/HEN2 of Nuclear Exosome... | 0.06 | OrthoFinder output from all 47 species | |
Spa_g08781 | No alias | RNA helicase component *(MTR4) of TRAMP nucleolar... | 0.02 | OrthoFinder output from all 47 species | |
Spa_g11434 | No alias | RNA helicase component *(SKI2) of SUPERKILLER regulation... | 0.04 | OrthoFinder output from all 47 species | |
Spa_g29638 | HEN2 | RNA helicase component *(HEN2) of Nuclear Exosome... | 0.06 | OrthoFinder output from all 47 species | |
Tin_g04756 | No alias | RNA helicase component *(SKI2) of SUPERKILLER regulation... | 0.04 | OrthoFinder output from all 47 species | |
Tin_g11923 | HEN2 | RNA helicase component *(HEN2) of Nuclear Exosome... | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e013693_P002 | Zm00001e013693 | RNA helicase component SKI2 of SUPERKILLER (SKI)... | 0.15 | OrthoFinder output from all 47 species | |
Zm00001e025923_P001 | HEN2, Zm00001e025923 | RNA helicase component MTR4/HEN2 of Nuclear Exosome... | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e036710_P004 | Zm00001e036710 | RNA helicase component MTR4/HEN2 of Nuclear Exosome... | 0.08 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000723 | telomere maintenance | IEP | HCCA |
MF | GO:0003674 | molecular_function | IEP | HCCA |
MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
MF | GO:0003677 | DNA binding | IEP | HCCA |
MF | GO:0003689 | DNA clamp loader activity | IEP | HCCA |
MF | GO:0003774 | cytoskeletal motor activity | IEP | HCCA |
MF | GO:0003777 | microtubule motor activity | IEP | HCCA |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | HCCA |
MF | GO:0004525 | ribonuclease III activity | IEP | HCCA |
MF | GO:0005488 | binding | IEP | HCCA |
MF | GO:0005524 | ATP binding | IEP | HCCA |
CC | GO:0005663 | DNA replication factor C complex | IEP | HCCA |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0006259 | DNA metabolic process | IEP | HCCA |
BP | GO:0006260 | DNA replication | IEP | HCCA |
BP | GO:0006351 | DNA-templated transcription | IEP | HCCA |
BP | GO:0006396 | RNA processing | IEP | HCCA |
BP | GO:0006397 | mRNA processing | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0007017 | microtubule-based process | IEP | HCCA |
BP | GO:0007018 | microtubule-based movement | IEP | HCCA |
MF | GO:0008017 | microtubule binding | IEP | HCCA |
MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | HCCA |
MF | GO:0008270 | zinc ion binding | IEP | HCCA |
BP | GO:0009059 | macromolecule biosynthetic process | IEP | HCCA |
BP | GO:0009987 | cellular process | IEP | HCCA |
MF | GO:0015631 | tubulin binding | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
MF | GO:0016779 | nucleotidyltransferase activity | IEP | HCCA |
BP | GO:0018130 | heterocycle biosynthetic process | IEP | HCCA |
BP | GO:0019438 | aromatic compound biosynthetic process | IEP | HCCA |
BP | GO:0031123 | RNA 3'-end processing | IEP | HCCA |
BP | GO:0031124 | mRNA 3'-end processing | IEP | HCCA |
BP | GO:0032200 | telomere organization | IEP | HCCA |
MF | GO:0032296 | double-stranded RNA-specific ribonuclease activity | IEP | HCCA |
MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
BP | GO:0032774 | RNA biosynthetic process | IEP | HCCA |
MF | GO:0034061 | DNA polymerase activity | IEP | HCCA |
MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | HCCA |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | HCCA |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
BP | GO:0044238 | primary metabolic process | IEP | HCCA |
BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
BP | GO:0051276 | chromosome organization | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
MF | GO:0097747 | RNA polymerase activity | IEP | HCCA |
MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
MF | GO:0140657 | ATP-dependent activity | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | HCCA |
MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
No external refs found! |