LOC_Os02g06370.1 (WHY2, ATWHY2, LOC_Os02g06370)

Aliases : WHY2, ATWHY2, LOC_Os02g06370

Description : recombination mediator (Whirly). Whirly-type plastidial RNA splicing factor

Gene families : OG0002379 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002379_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os02g06370.1

Target	Alias	Description	ECC score	Gene Family Method
AT1G71260	WHY2, ATWHY2	WHIRLY 2	0.03	OrthoFinder output from all 47 species
Aev_g12642	ATWHY1, WHY1, PTAC1	recombination mediator *(Whirly) & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g11449	ATWHY1, WHY1, PTAC1	recombination mediator *(Whirly) & original description: none	0.03	OrthoFinder output from all 47 species
MA_89233g0010	ATWHY1, WHY1, PTAC1	recombination mediator (Whirly). Whirly-type plastidial...	0.02	OrthoFinder output from all 47 species
Ppi_g00548	ATWHY1, WHY1, PTAC1	recombination mediator *(Whirly) & original description: none	0.03	OrthoFinder output from all 47 species
Smo84708	ATWHY1, WHY1, PTAC1	RNA processing.organelle machineries.RNA...	0.02	OrthoFinder output from all 47 species
Solyc11g044750.3.1	WHY2, ATWHY2,...	recombination mediator (Whirly). Whirly-type plastidial...	0.07	OrthoFinder output from all 47 species
Zm00001e025194_P001	WHY2, ATWHY2,...	recombination mediator (Whirly). Whirly-type plastidial...	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003697	single-stranded DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006275	regulation of DNA replication	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0051052	regulation of DNA metabolic process	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR013742	Whirly	52	186

External Links

No external refs found!

LOC_Os02g06370.1 (WHY2, ATWHY2, LOC_Os02g06370)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation