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  5. LOC_Os02g05310.4

LOC_Os02g05310.4 (LOC_Os02g05310)


Aliases : LOC_Os02g05310

Description : component SF3B1 of splicing factor 3B complex


Gene families : OG0002634 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002634_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g05310.4

Target Alias Description ECC score Gene Family Method Actions
AT5G64270 No alias splicing factor, putative 0.07 OrthoFinder output from all 47 species
Adi_g087263 No alias component *(SF3B1) of splicing factor 3B complex &... 0.03 OrthoFinder output from all 47 species
Adi_g104747 No alias component *(SF3B1) of splicing factor 3B complex &... 0.03 OrthoFinder output from all 47 species
Ala_g02669 No alias component *(SF3B1) of splicing factor 3B complex &... 0.03 OrthoFinder output from all 47 species
Als_g10272 No alias component *(SF3B1) of splicing factor 3B complex &... 0.04 OrthoFinder output from all 47 species
Als_g58968 No alias component *(SF3B1) of splicing factor 3B complex &... 0.02 OrthoFinder output from all 47 species
Aob_g02393 No alias component *(SF3B1) of splicing factor 3B complex &... 0.04 OrthoFinder output from all 47 species
Aop_g71156 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g25739 No alias component *(SF3B1) of splicing factor 3B complex &... 0.03 OrthoFinder output from all 47 species
Ceric.02G008400.1 Ceric.02G008400 component *(SF3B1) of splicing factor 3B complex &... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000402.41 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
Cre12.g494100 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.05 OrthoFinder output from all 47 species
Dcu_g04130 No alias component *(SF3B1) of splicing factor 3B complex &... 0.06 OrthoFinder output from all 47 species
Ehy_g02942 No alias component *(SF3B1) of splicing factor 3B complex &... 0.07 OrthoFinder output from all 47 species
GSVIVT01025852001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.09 OrthoFinder output from all 47 species
Gb_12533 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Gb_14294 No alias component SF3B1 of splicing factor 3B complex 0.05 OrthoFinder output from all 47 species
Gb_20157 No alias component SF3B1 of splicing factor 3B complex 0.05 OrthoFinder output from all 47 species
Len_g38026 No alias component *(SF3B1) of splicing factor 3B complex &... 0.02 OrthoFinder output from all 47 species
Msp_g11331 No alias component *(SF3B1) of splicing factor 3B complex &... 0.03 OrthoFinder output from all 47 species
Nbi_g04463 No alias component *(SF3B1) of splicing factor 3B complex &... 0.08 OrthoFinder output from all 47 species
Ore_g05022 No alias component *(SF3B1) of splicing factor 3B complex &... 0.04 OrthoFinder output from all 47 species
Pir_g13624 No alias component *(SF3B1) of splicing factor 3B complex &... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000478 No alias component *(SF3B1) of splicing factor 3B complex &... 0.03 OrthoFinder output from all 47 species
Sam_g25156 No alias component *(SF3B1) of splicing factor 3B complex &... 0.04 OrthoFinder output from all 47 species
Smo97336 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.04 OrthoFinder output from all 47 species
Spa_g30068 No alias component *(SF3B1) of splicing factor 3B complex &... 0.04 OrthoFinder output from all 47 species
Tin_g02906 No alias component *(SF3B1) of splicing factor 3B complex &... 0.02 OrthoFinder output from all 47 species
Zm00001e025224_P001 Zm00001e025224 component SF3B1 of splicing factor 3B complex 0.12 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
CC GO:0000152 nuclear ubiquitin ligase complex IEP HCCA
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002098 tRNA wobble uridine modification IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005680 anaphase-promoting complex IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0007346 regulation of mitotic cell cycle IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0010564 regulation of cell cycle process IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
BP GO:0030071 regulation of mitotic metaphase/anaphase transition IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033043 regulation of organelle organization IEP HCCA
BP GO:0033044 regulation of chromosome organization IEP HCCA
BP GO:0033045 regulation of sister chromatid segregation IEP HCCA
CC GO:0033588 elongator holoenzyme complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
BP GO:0051983 regulation of chromosome segregation IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901987 regulation of cell cycle phase transition IEP HCCA
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP HCCA
BP GO:1902099 regulation of metaphase/anaphase transition of cell cycle IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR015016 SF3b_su1 297 428
No external refs found!