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  5. LOC_Os02g04640.1

LOC_Os02g04640.1 (LOC_Os02g04640)


Aliases : LOC_Os02g04640

Description : G2-like GARP transcription factor


Gene families : OG0000036 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g04640.1
Cluster HCCA: Cluster_100

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00013790 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.04 OrthoFinder output from all 47 species
AMTR_s00022p00190540 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.04 OrthoFinder output from all 47 species
AMTR_s00025p00224230 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.03 OrthoFinder output from all 47 species
AMTR_s00044p00042560 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.06 OrthoFinder output from all 47 species
AMTR_s00119p00095480 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.04 OrthoFinder output from all 47 species
AT1G69580 No alias Homeodomain-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT1G79430 APL, WDY Homeodomain-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G04030 No alias Homeodomain-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G13040 No alias myb-like HTH transcriptional regulator family protein 0.08 OrthoFinder output from all 47 species
AT5G06800 No alias myb-like HTH transcriptional regulator family protein 0.05 OrthoFinder output from all 47 species
AT5G18240 ATMYR1, MYR1 myb-related protein 1 0.03 OrthoFinder output from all 47 species
Adi_g023512 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g077902 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g078895 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g07265 KAN2 KANADI-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g39180 No alias transcription factor *(CLAUSA) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g02237 KAN2 KANADI-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g13279 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ala_g14535 No alias GARP subgroup PHL transcription factor & original... 0.04 OrthoFinder output from all 47 species
Als_g03610 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Als_g04171 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Als_g09189 No alias transcription factor *(CLAUSA) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g09241 No alias transcription factor *(CLAUSA) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30198 PHR1, AtPHR1 GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Als_g42445 No alias GARP subgroup PHL transcription factor & original... 0.04 OrthoFinder output from all 47 species
Als_g62358 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Aob_g01763 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Aob_g13779 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Aob_g40723 No alias transcription factor *(CLAUSA) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g07032 KAN4, ATS KANADI-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g09828 KAN, KAN1 KANADI-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g11654 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Aop_g29692 PHR1, AtPHR1 GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene14328.t1 KAN, KAN1,... KANADI-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene21949.t1 Aspi01Gene21949 transcription factor *(CLAUSA) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene42938.t1 Aspi01Gene42938 GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene48429.t1 Aspi01Gene48429 GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene65261.t1 Aspi01Gene65261 GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0006.g009521 No alias not classified & original description: CDS=1-1092 0.03 OrthoFinder output from all 47 species
Azfi_s0089.g042590 No alias not classified & original description: CDS=1-831 0.02 OrthoFinder output from all 47 species
Azfi_s0121.g046895 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Cba_g11638 No alias transcription factor *(PHR1) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g15047 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Cba_g15907 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Cba_g17095 PHR1, AtPHR1 GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Cba_g19840 PHR1, AtPHR1 GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Cba_g24534 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ceric.11G047900.1 Ceric.11G047900 GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.12G062400.1 Ceric.12G062400 GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ceric.21G076700.1 Ceric.21G076700 GARP subgroup PHL transcription factor & original... 0.04 OrthoFinder output from all 47 species
Ceric.22G040100.1 Ceric.22G040100 GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ceric.31G067100.1 Ceric.31G067100 GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Cre12.g495100 No alias RNA biosynthesis.transcriptional activation.MYB... 0.01 OrthoFinder output from all 47 species
Dac_g08384 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Dac_g31158 KAN2 KANADI-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g32380 KAN4, ATS not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g43661 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Dcu_g02950 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Dcu_g04642 No alias transcription factor *(CLAUSA) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g06116 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Dcu_g06265 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Dcu_g08815 KAN2 KANADI-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g17436 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Dde_g39292 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ehy_g00938 No alias transcription factor *(CLAUSA) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g03380 No alias GARP subgroup PHL transcription factor & original... 0.04 OrthoFinder output from all 47 species
Ehy_g06057 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ehy_g08285 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ehy_g14665 No alias transcription factor *(CLAUSA) & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g21996 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ehy_g22986 KAN4, ATS KANADI-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g29468 No alias transcription factor *(CLAUSA) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01015900001 APL, WDY RNA biosynthesis.transcriptional activation.MYB... 0.03 OrthoFinder output from all 47 species
GSVIVT01020827001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 OrthoFinder output from all 47 species
GSVIVT01021225001 No alias Putative Myb family transcription factor At1g14600... 0.03 OrthoFinder output from all 47 species
GSVIVT01022645001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 OrthoFinder output from all 47 species
GSVIVT01025867001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 OrthoFinder output from all 47 species
GSVIVT01033381001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 OrthoFinder output from all 47 species
GSVIVT01033515001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 OrthoFinder output from all 47 species
GSVIVT01036717001 APL, WDY RNA biosynthesis.transcriptional activation.MYB... 0.03 OrthoFinder output from all 47 species
Gb_05533 PHR1, AtPHR1 PHR1 transcription factor involved in proline synthesis... 0.03 OrthoFinder output from all 47 species
Gb_25174 No alias G2-like GARP transcription factor 0.02 OrthoFinder output from all 47 species
Gb_25992 No alias G2-like GARP transcription factor 0.05 OrthoFinder output from all 47 species
Gb_26822 PHL1 G2-like GARP transcription factor 0.02 OrthoFinder output from all 47 species
Gb_41007 No alias G2-like GARP transcription factor 0.02 OrthoFinder output from all 47 species
LOC_Os02g45080.1 LOC_Os02g45080 G2-like GARP transcription factor 0.02 OrthoFinder output from all 47 species
LOC_Os06g45890.1 LOC_Os06g45890 G2-like GARP transcription factor 0.03 OrthoFinder output from all 47 species
LOC_Os11g01480.1 LOC_Os11g01480 Putative Myb family transcription factor At1g14600... 0.05 OrthoFinder output from all 47 species
LOC_Os12g01490.1 LOC_Os12g01490 Putative Myb family transcription factor At1g14600... 0.05 OrthoFinder output from all 47 species
Len_g02256 PHR1, AtPHR1 GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Len_g09751 No alias transcription factor *(CLAUSA) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g22909 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Lfl_g05331 No alias transcription factor *(CLAUSA) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05890 No alias GARP subgroup PHL transcription factor & original... 0.04 OrthoFinder output from all 47 species
Lfl_g11028 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Lfl_g32204 KAN2 KANADI-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
MA_335624g0020 No alias G2-like GARP transcription factor 0.02 OrthoFinder output from all 47 species
MA_52379g0010 No alias G2-like GARP transcription factor 0.05 OrthoFinder output from all 47 species
MA_8183372g0010 No alias G2-like GARP transcription factor 0.02 OrthoFinder output from all 47 species
MA_937875g0010 No alias G2-like GARP transcription factor 0.03 OrthoFinder output from all 47 species
Msp_g04815 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Msp_g25706 No alias transcription factor *(CLAUSA) & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g35324 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Nbi_g12418 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Nbi_g15270 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g00386 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ore_g03912 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ore_g19106 KAN, KAN1 KANADI-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g30067 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g37615 KAN, KAN1 KANADI-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g05922 No alias transcription factor *(CLAUSA) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g08186 No alias transcription factor *(CLAUSA) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g21028 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Pnu_g21082 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Pnu_g22623 KAN4, ATS KANADI-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g28434 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g39079 KAN, KAN1 KANADI-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g41564 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ppi_g61598 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g000821 No alias transcription factor *(CLAUSA) & original description:... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0009.g004589 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005338 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005961 KAN3 not classified & original description: CDS=52-843 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0030.g010288 KAN4, ATS KANADI-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0042.g012676 No alias GARP subgroup HHO transcription factor & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0065.g016001 No alias not classified & original description: CDS=379-1050 0.03 OrthoFinder output from all 47 species
Sam_g08412 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Sam_g12596 No alias transcription factor *(CLAUSA) & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g18448 No alias KANADI-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g18907 No alias transcription factor *(CLAUSA) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g29265 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo405399 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 OrthoFinder output from all 47 species
Solyc02g076670.3.1 Solyc02g076670 Putative Myb family transcription factor At1g14600... 0.05 OrthoFinder output from all 47 species
Solyc04g079600.3.1 KAN4, ATS, Solyc04g079600 G2-like GARP transcription factor 0.02 OrthoFinder output from all 47 species
Solyc07g045000.4.1 Solyc07g045000 Putative Myb family transcription factor At1g14600... 0.04 OrthoFinder output from all 47 species
Solyc07g049640.3.1 APL, WDY, Solyc07g049640 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Solyc10g078720.2.1 Solyc10g078720 G2-like GARP transcription factor 0.03 OrthoFinder output from all 47 species
Solyc10g083340.3.1 Solyc10g083340 G2-like GARP transcription factor 0.03 OrthoFinder output from all 47 species
Solyc10g085620.2.1 Solyc10g085620 G2-like GARP transcription factor 0.03 OrthoFinder output from all 47 species
Spa_g05501 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Spa_g05502 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Spa_g09343 KAN2 KANADI-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g16091 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Spa_g25153 No alias transcription factor *(CLAUSA) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g01742 No alias GARP subgroup PHL transcription factor & original... 0.04 OrthoFinder output from all 47 species
Zm00001e001526_P001 Zm00001e001526 G2-like GARP transcription factor 0.03 OrthoFinder output from all 47 species
Zm00001e004125_P001 Zm00001e004125 G2-like GARP transcription factor 0.04 OrthoFinder output from all 47 species
Zm00001e005797_P001 KAN4, ATS, Zm00001e005797 G2-like GARP transcription factor 0.03 OrthoFinder output from all 47 species
Zm00001e013626_P001 Zm00001e013626 G2-like GARP transcription factor 0.05 OrthoFinder output from all 47 species
Zm00001e013758_P003 APL, WDY, Zm00001e013758 G2-like GARP transcription factor 0.02 OrthoFinder output from all 47 species
Zm00001e015547_P002 Zm00001e015547 Myb-related protein 1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Zm00001e018018_P002 KAN4, ATS, Zm00001e018018 G2-like GARP transcription factor 0.02 OrthoFinder output from all 47 species
Zm00001e022412_P003 KAN2, Zm00001e022412 G2-like GARP transcription factor 0.02 OrthoFinder output from all 47 species
Zm00001e027318_P001 Zm00001e027318 G2-like GARP transcription factor 0.04 OrthoFinder output from all 47 species
Zm00001e030689_P002 Zm00001e030689 G2-like GARP transcription factor 0.03 OrthoFinder output from all 47 species
Zm00001e031978_P001 Zm00001e031978 G2-like GARP transcription factor 0.03 OrthoFinder output from all 47 species
Zm00001e035893_P001 Zm00001e035893 G2-like GARP transcription factor 0.02 OrthoFinder output from all 47 species
Zm00001e037731_P001 APL, WDY, Zm00001e037731 G2-like GARP transcription factor 0.03 OrthoFinder output from all 47 species
Zm00001e037761_P001 Zm00001e037761 G2-like GARP transcription factor 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004334 fumarylacetoacetase activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0006308 DNA catabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009072 aromatic amino acid metabolic process IEP HCCA
MF GO:0015079 potassium ion transmembrane transporter activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016636 oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0016822 hydrolase activity, acting on acid carbon-carbon bonds IEP HCCA
MF GO:0016823 hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
MF GO:0051743 red chlorophyll catabolite reductase activity IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071805 potassium ion transmembrane transport IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001005 SANT/Myb 268 318
IPR025756 Myb_CC_LHEQLE 353 399
No external refs found!