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  5. LOC_Os02g04050.1

LOC_Os02g04050.1 (TTN7, SMC3, LOC_Os02g04050)


Aliases : TTN7, SMC3, LOC_Os02g04050

Description : component SMC3/TTN7 of cohesin regulator complex


Gene families : OG0003981 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003981_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g04050.1
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00198530 TTN7, SMC3,... Cell cycle.mitosis and meiosis.sister chromatid... 0.03 OrthoFinder output from all 47 species
AMTR_s00029p00198810 TTN7, SMC3,... Cell cycle.mitosis and meiosis.sister chromatid... 0.04 OrthoFinder output from all 47 species
AT2G27170 TTN7, SMC3 Structural maintenance of chromosomes (SMC) family protein 0.06 OrthoFinder output from all 47 species
Als_g10466 TTN7, SMC3 component *(SMC3/TTN7) of cohesin regulator complex &... 0.02 OrthoFinder output from all 47 species
Aob_g19956 TTN7, SMC3 component *(SMC3/TTN7) of cohesin regulator complex &... 0.04 OrthoFinder output from all 47 species
Azfi_s0147.g053026 TTN7, SMC3 component *(SMC3/TTN7) of cohesin regulator complex &... 0.03 OrthoFinder output from all 47 species
Cba_g02732 TTN7, SMC3 component *(SMC3/TTN7) of cohesin regulator complex &... 0.02 OrthoFinder output from all 47 species
Dcu_g09520 TTN7, SMC3 component *(SMC3/TTN7) of cohesin regulator complex &... 0.03 OrthoFinder output from all 47 species
Lfl_g04244 TTN7, SMC3 component *(SMC3/TTN7) of cohesin regulator complex &... 0.03 OrthoFinder output from all 47 species
Mp5g09700.1 TTN7, SMC3 component SMC3/TTN7 of cohesin regulator complex 0.02 OrthoFinder output from all 47 species
Nbi_g04455 TTN7, SMC3 component *(SMC3/TTN7) of cohesin regulator complex &... 0.02 OrthoFinder output from all 47 species
Ore_g10784 TTN7, SMC3 component *(SMC3/TTN7) of cohesin regulator complex &... 0.02 OrthoFinder output from all 47 species
Ppi_g01382 TTN7, SMC3 component *(SMC3/TTN7) of cohesin regulator complex &... 0.04 OrthoFinder output from all 47 species
Solyc06g073780.4.1 TTN7, SMC3,... component SMC3/TTN7 of cohesin regulator complex 0.06 OrthoFinder output from all 47 species
Spa_g10771 TTN7, SMC3 component *(SMC3/TTN7) of cohesin regulator complex &... 0.02 OrthoFinder output from all 47 species
Zm00001e032592_P001 TTN7, SMC3,... component SMC3/TTN7 of cohesin regulator complex 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005694 chromosome IEA Interproscan
BP GO:0051276 chromosome organization IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0034457 Mpp10 complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR010935 SMC_hinge 518 630
IPR003395 RecF/RecN/SMC_N 2 133
No external refs found!