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  5. LOC_Os02g04040.1

LOC_Os02g04040.1 (TTN7, SMC3, LOC_Os02g04040)


Aliases : TTN7, SMC3, LOC_Os02g04040

Description : component SMC3/TTN7 of cohesin regulator complex


Gene families : OG0003981 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003981_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g04040.1

Target Alias Description ECC score Gene Family Method Actions
AT2G27170 TTN7, SMC3 Structural maintenance of chromosomes (SMC) family protein 0.06 OrthoFinder output from all 47 species
Adi_g076982 TTN7, SMC3 component *(SMC3/TTN7) of cohesin regulator complex &... 0.05 OrthoFinder output from all 47 species
Als_g10466 TTN7, SMC3 component *(SMC3/TTN7) of cohesin regulator complex &... 0.03 OrthoFinder output from all 47 species
Aob_g19956 TTN7, SMC3 component *(SMC3/TTN7) of cohesin regulator complex &... 0.03 OrthoFinder output from all 47 species
Azfi_s0147.g053026 TTN7, SMC3 component *(SMC3/TTN7) of cohesin regulator complex &... 0.03 OrthoFinder output from all 47 species
Cba_g02732 TTN7, SMC3 component *(SMC3/TTN7) of cohesin regulator complex &... 0.02 OrthoFinder output from all 47 species
Ceric.05G021600.1 TTN7, SMC3,... component *(SMC3/TTN7) of cohesin regulator complex &... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000711.46 TTN7, SMC3 Structural maintenance of chromosomes protein 3... 0.02 OrthoFinder output from all 47 species
Cre10.g445650 TTN7, SMC3 Cell cycle.mitosis and meiosis.sister chromatid... 0.03 OrthoFinder output from all 47 species
Dac_g05785 TTN7, SMC3 component *(SMC3/TTN7) of cohesin regulator complex &... 0.02 OrthoFinder output from all 47 species
Dcu_g09520 TTN7, SMC3 component *(SMC3/TTN7) of cohesin regulator complex &... 0.03 OrthoFinder output from all 47 species
GSVIVT01033181001 TTN7, SMC3 Cell cycle.mitosis and meiosis.sister chromatid... 0.1 OrthoFinder output from all 47 species
MA_182035g0010 TTN7, SMC3 Structural maintenance of chromosomes protein 3... 0.02 OrthoFinder output from all 47 species
Mp5g09700.1 TTN7, SMC3 component SMC3/TTN7 of cohesin regulator complex 0.04 OrthoFinder output from all 47 species
Ore_g10784 TTN7, SMC3 component *(SMC3/TTN7) of cohesin regulator complex &... 0.02 OrthoFinder output from all 47 species
Pnu_g19207 TTN7, SMC3 component *(SMC3/TTN7) of cohesin regulator complex &... 0.02 OrthoFinder output from all 47 species
Ppi_g01382 TTN7, SMC3 component *(SMC3/TTN7) of cohesin regulator complex &... 0.02 OrthoFinder output from all 47 species
Solyc06g073780.4.1 TTN7, SMC3,... component SMC3/TTN7 of cohesin regulator complex 0.08 OrthoFinder output from all 47 species
Spa_g10771 TTN7, SMC3 component *(SMC3/TTN7) of cohesin regulator complex &... 0.02 OrthoFinder output from all 47 species
Zm00001e032592_P001 TTN7, SMC3,... component SMC3/TTN7 of cohesin regulator complex 0.12 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
MF GO:0042393 histone binding IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR003395 RecF/RecN/SMC_N 138 469
No external refs found!