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  5. LOC_Os02g02820.1

LOC_Os02g02820.1 (AMS, LOC_Os02g02820)


Aliases : AMS, LOC_Os02g02820

Description : transcription factor (bHLH)


Gene families : OG0006543 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006543_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g02820.1
Cluster HCCA: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
AT2G16910 AMS basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.1 OrthoFinder output from all 47 species
Aop_g70080 AMS transcriptional regulator *(DYT1/AMS) & original... 0.06 OrthoFinder output from all 47 species
Aspi01Gene65000.t1 AMS, Aspi01Gene65000 transcriptional regulator *(DYT1/AMS) & original... 0.02 OrthoFinder output from all 47 species
Dcu_g12007 AMS transcriptional regulator *(DYT1/AMS) & original... 0.04 OrthoFinder output from all 47 species
Dde_g46165 AMS transcriptional regulator *(DYT1/AMS) & original... 0.06 OrthoFinder output from all 47 species
GSVIVT01013720001 AMS RNA biosynthesis.transcriptional activation.bHLH... 0.08 OrthoFinder output from all 47 species
GSVIVT01013744001 AMS RNA biosynthesis.transcriptional activation.bHLH... 0.04 OrthoFinder output from all 47 species
GSVIVT01024008001 AMS RNA biosynthesis.transcriptional activation.bHLH... 0.06 OrthoFinder output from all 47 species
Msp_g44010 AMS transcriptional regulator *(DYT1/AMS) & original... 0.04 OrthoFinder output from all 47 species
Nbi_g11389 AMS transcriptional regulator *(DYT1/AMS) & original... 0.04 OrthoFinder output from all 47 species
Ore_g07281 AMS transcriptional regulator *(DYT1/AMS) & original... 0.02 OrthoFinder output from all 47 species
Pnu_g34078 AMS transcriptional regulator *(DYT1/AMS) & original... 0.02 OrthoFinder output from all 47 species
Ppi_g01138 AMS transcriptional regulator *(DYT1/AMS) & original... 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0025.g009349 AMS transcriptional regulator *(DYT1/AMS) & original... 0.02 OrthoFinder output from all 47 species
Sam_g17963 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g49026 No alias transcriptional regulator *(DYT1/AMS) & original... 0.03 OrthoFinder output from all 47 species
Solyc08g062780.2.1 AMS, Solyc08g062780 transcription factor (bHLH) 0.11 OrthoFinder output from all 47 species
Spa_g47867 AMS transcriptional regulator *(DYT1/AMS) & original... 0.05 OrthoFinder output from all 47 species
Tin_g45475 AMS transcriptional regulator *(DYT1/AMS) & original... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
BP GO:0006417 regulation of translation IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
BP GO:0009890 negative regulation of biosynthetic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010608 post-transcriptional regulation of gene expression IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP HCCA
BP GO:0017148 negative regulation of translation IEP HCCA
MF GO:0030597 RNA glycosylase activity IEP HCCA
MF GO:0030598 rRNA N-glycosylase activity IEP HCCA
BP GO:0031324 negative regulation of cellular metabolic process IEP HCCA
BP GO:0031327 negative regulation of cellular biosynthetic process IEP HCCA
BP GO:0034248 regulation of amide metabolic process IEP HCCA
BP GO:0034249 negative regulation of amide metabolic process IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048523 negative regulation of cellular process IEP HCCA
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051248 negative regulation of protein metabolic process IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140102 catalytic activity, acting on a rRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP HCCA
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR011598 bHLH_dom 288 331
No external refs found!