Aliases : emb1507, LOC_Os02g01740
Description : RNA helicase (Brr2)
Gene families : OG0001175 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001175_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00022p00114710 | emb1507,... | RNA processing.RNA splicing.spliceosome... | 0.06 | OrthoFinder output from all 47 species | |
AMTR_s00077p00041680 | emb1507,... | DExH-box ATP-dependent RNA helicase DExH12... | 0.03 | OrthoFinder output from all 47 species | |
AMTR_s00110p00146400 | evm_27.TU.AmTr_v1... | DExH-box ATP-dependent RNA helicase DExH14... | 0.02 | OrthoFinder output from all 47 species | |
AT1G20960 | emb1507 | U5 small nuclear ribonucleoprotein helicase, putative | 0.04 | OrthoFinder output from all 47 species | |
Adi_g085426 | No alias | RNA helicase *(Brr2) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Adi_g117139 | emb1507 | RNA helicase *(Brr2) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Aev_g29910 | No alias | RNA helicase *(Brr2) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ala_g04355 | emb1507 | RNA helicase *(Brr2) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Als_g01991 | emb1507 | RNA helicase *(Brr2) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Aob_g40053 | emb1507 | RNA helicase *(Brr2) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Aop_g08117 | emb1507 | RNA helicase *(Brr2) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Aop_g09018 | No alias | RNA helicase *(Brr2) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Azfi_s0003.g007779 | emb1507 | RNA helicase *(Brr2) & original description: CDS=215-6733 | 0.03 | OrthoFinder output from all 47 species | |
Cba_g05989 | emb1507 | RNA helicase *(Brr2) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Ceric.31G022500.1 | emb1507, Ceric.31G022500 | RNA helicase *(Brr2) & original description:... | 0.04 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00000865.27 | emb1507 | DExH-box ATP-dependent RNA helicase DExH12... | 0.03 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00000865.28 | emb1507 | DExH-box ATP-dependent RNA helicase DExH12... | 0.03 | OrthoFinder output from all 47 species | |
Cre17.g744147 | emb1507 | RNA processing.RNA splicing.spliceosome... | 0.02 | OrthoFinder output from all 47 species | |
Dac_g02389 | emb1507 | RNA helicase *(Brr2) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Dac_g12553 | No alias | RNA helicase *(Brr2) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Dcu_g19260 | emb1507 | RNA helicase *(Brr2) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Ehy_g12876 | emb1507 | RNA helicase *(Brr2) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
GSVIVT01007875001 | No alias | DExH-box ATP-dependent RNA helicase DExH14... | 0.04 | OrthoFinder output from all 47 species | |
GSVIVT01010769001 | emb1507 | DExH-box ATP-dependent RNA helicase DExH12... | 0.08 | OrthoFinder output from all 47 species | |
Gb_27895 | emb1507 | RNA helicase (Brr2) | 0.04 | OrthoFinder output from all 47 species | |
Len_g08641 | emb1507 | RNA helicase *(Brr2) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Len_g21125 | No alias | RNA helicase *(Brr2) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Lfl_g05048 | emb1507 | RNA helicase *(Brr2) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Lfl_g09106 | No alias | RNA helicase *(Brr2) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
MA_8113344g0010 | No alias | DExH-box ATP-dependent RNA helicase DExH14... | 0.03 | OrthoFinder output from all 47 species | |
MA_81219g0020 | emb1507 | DExH-box ATP-dependent RNA helicase DExH12... | 0.07 | OrthoFinder output from all 47 species | |
MA_81219g0030 | emb1507 | DExH-box ATP-dependent RNA helicase DExH12... | 0.08 | OrthoFinder output from all 47 species | |
MA_823844g0010 | No alias | DExH-box ATP-dependent RNA helicase DExH14... | 0.05 | OrthoFinder output from all 47 species | |
MA_930633g0010 | No alias | DExH-box ATP-dependent RNA helicase DExH14... | 0.04 | OrthoFinder output from all 47 species | |
Mp1g06890.1 | emb1507 | RNA helicase (Brr2) | 0.03 | OrthoFinder output from all 47 species | |
Msp_g14398 | No alias | RNA helicase *(Brr2) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0119.g021333 | emb1507 | RNA helicase *(Brr2) & original description: CDS=88-5190 | 0.02 | OrthoFinder output from all 47 species | |
Sam_g18045 | No alias | RNA helicase *(Brr2) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Smo144158 | emb1507 | RNA processing.RNA splicing.spliceosome... | 0.04 | OrthoFinder output from all 47 species | |
Solyc06g082100.4.1 | emb1507, Solyc06g082100 | RNA helicase (Brr2) | 0.04 | OrthoFinder output from all 47 species | |
Spa_g39786 | No alias | RNA helicase *(Brr2) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Tin_g07743 | emb1507 | RNA helicase *(Brr2) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e035676_P001 | emb1507, Zm00001e035676 | RNA helicase (Brr2) | 0.12 | OrthoFinder output from all 47 species | |
Zm00001e038727_P001 | Zm00001e038727 | DExH-box ATP-dependent RNA helicase DExH14... | 0.03 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
MF | GO:0005524 | ATP binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | HCCA |
BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | HCCA |
BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | HCCA |
MF | GO:0003690 | double-stranded DNA binding | IEP | HCCA |
MF | GO:0005515 | protein binding | IEP | HCCA |
BP | GO:0006396 | RNA processing | IEP | HCCA |
BP | GO:0006397 | mRNA processing | IEP | HCCA |
BP | GO:0006479 | protein methylation | IEP | HCCA |
MF | GO:0008170 | N-methyltransferase activity | IEP | HCCA |
BP | GO:0008213 | protein alkylation | IEP | HCCA |
MF | GO:0008270 | zinc ion binding | IEP | HCCA |
MF | GO:0008276 | protein methyltransferase activity | IEP | HCCA |
BP | GO:0008380 | RNA splicing | IEP | HCCA |
MF | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | IEP | HCCA |
BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
MF | GO:0016278 | lysine N-methyltransferase activity | IEP | HCCA |
MF | GO:0016279 | protein-lysine N-methyltransferase activity | IEP | HCCA |
BP | GO:0016570 | histone modification | IEP | HCCA |
BP | GO:0016571 | histone methylation | IEP | HCCA |
MF | GO:0017069 | snRNA binding | IEP | HCCA |
MF | GO:0017070 | U6 snRNA binding | IEP | HCCA |
BP | GO:0018022 | peptidyl-lysine methylation | IEP | HCCA |
MF | GO:0018024 | histone lysine N-methyltransferase activity | IEP | HCCA |
BP | GO:0018193 | peptidyl-amino acid modification | IEP | HCCA |
BP | GO:0018205 | peptidyl-lysine modification | IEP | HCCA |
MF | GO:0030623 | U5 snRNA binding | IEP | HCCA |
BP | GO:0032259 | methylation | IEP | HCCA |
BP | GO:0034968 | histone lysine methylation | IEP | HCCA |
MF | GO:0042054 | histone methyltransferase activity | IEP | HCCA |
BP | GO:0043414 | macromolecule methylation | IEP | HCCA |
MF | GO:0046914 | transition metal ion binding | IEP | HCCA |
No external refs found! |