LOC_Os02g01355.1 (SOC1, AGL20, ATSOC1,...)

Aliases : SOC1, AGL20, ATSOC1, LOC_Os02g01355

Description : transcription factor (MADS/AGL)

Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os02g01355.1

Target	Alias	Description	ECC score	Gene Family Method
AT4G37940	AGL21	AGAMOUS-like 21	0.04	OrthoFinder output from all 47 species
Adi_g010317	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g089152	AGL10, CAL1, CAL	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g07250	AGL16	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g28879	AGL21	MADS/AGL-type transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Aob_g04227	AGL18	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g12233	AGL30	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene15816.t1	SOC1, AGL20,...	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene17593.t1	AGL104, Aspi01Gene17593	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0062.g035272	AGL16	MADS/AGL-type transcription factor & original...	0.06	OrthoFinder output from all 47 species
Cba_g08623	AGL71	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g32938	SHP2, AGL5	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g34128	AGL21	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g43724	AGL16	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g30254	AGL79	not classified & original description: none	0.08	OrthoFinder output from all 47 species
Dde_g38503	AGL42	MADS/AGL-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Dde_g51026	AGL42	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01009171001	SVP, AGL22	RNA biosynthesis.transcriptional activation.MADS box...	0.07	OrthoFinder output from all 47 species
GSVIVT01012250001	AGL7, AP1	RNA biosynthesis.transcriptional activation.MADS box...	0.02	OrthoFinder output from all 47 species
LOC_Os04g23910.1	AGL16, LOC_Os04g23910	transcription factor (MADS/AGL)	0.05	OrthoFinder output from all 47 species
Len_g27271	AGL9, SEP3	MADS/AGL-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Len_g28209	STK, AGL11	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g13167	AGL42	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g14037	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g33207	AGL16	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
MA_138440g0010	SOC1, AGL20, ATSOC1	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
MA_16629g0010	ANR1, AGL44	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
Ore_g04651	AGL2, SEP1	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g42895	AGL16	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Pir_g21068	SOC1, AGL20, ATSOC1	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g66755	SOC1, AGL20, ATSOC1	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g22169	AGL94	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g25142	AGL10, CAL1, CAL	MADS/AGL-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Pnu_g25344	AGL30	MADS/AGL-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Sam_g31601	No alias	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g48749	No alias	MADS/AGL-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Solyc01g092950.3.1	SOC1, AGL20,...	MADS-box protein SOC1 OS=Arabidopsis thaliana...	0.1	OrthoFinder output from all 47 species
Solyc02g065730.2.1	AGL8, FUL, Solyc02g065730	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
Solyc02g091550.2.1	AGL21, Solyc02g091550	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Solyc03g019710.3.1	SHP2, AGL5,...	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
Solyc04g005320.3.1	AGL2, SEP1,...	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
Solyc05g012020.4.1	AGL2, SEP1,...	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
Solyc11g010570.2.1	SVP, AGL22,...	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Solyc12g038510.2.1	AGL4, SEP2,...	transcription factor (MADS/AGL)	0.05	OrthoFinder output from all 47 species
Spa_g04680	AGL16	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g05918	AGL16	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Spa_g22852	AGL65	MADS/AGL-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Zm00001e005705_P004	AGL7, AP1, Zm00001e005705	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
Zm00001e031267_P003	SHP2, AGL5,...	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002100	TF_MADSbox	50	97
IPR002487	TF_Kbox	125	213

External Links

No external refs found!

LOC_Os02g01355.1 (SOC1, AGL20, ATSOC1,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation