LOC_Os02g01250.1 (LOC_Os02g01250)


Aliases : LOC_Os02g01250

Description : component Sm-D3 of U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex


Gene families : OG0003441 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003441_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g01250.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00047670 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.07 OrthoFinder output from all 47 species
AT1G20580 No alias Small nuclear ribonucleoprotein family protein 0.08 OrthoFinder output from all 47 species
Adi_g022524 No alias component *(Sm-D3) of U1/U2/U4/U5-associated Sm... 0.02 OrthoFinder output from all 47 species
Aop_g02312 No alias component *(Sm-D3) of U1/U2/U4/U5-associated Sm... 0.02 OrthoFinder output from all 47 species
Azfi_s0373.g067189 No alias component *(Sm-D3) of U1/U2/U4/U5-associated Sm... 0.03 OrthoFinder output from all 47 species
Ceric.09G101500.1 Ceric.09G101500 component *(Sm-D3) of U1/U2/U4/U5-associated Sm... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020912.17 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.03 OrthoFinder output from all 47 species
Cre10.g455300 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.05 OrthoFinder output from all 47 species
GSVIVT01023894001 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.04 OrthoFinder output from all 47 species
Len_g36954 No alias component *(Sm-D3) of U1/U2/U4/U5-associated Sm... 0.02 OrthoFinder output from all 47 species
Lfl_g11459 No alias component *(Sm-D3) of U1/U2/U4/U5-associated Sm... 0.02 OrthoFinder output from all 47 species
MA_98884g0010 No alias component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... 0.02 OrthoFinder output from all 47 species
Mp1g11210.1 No alias component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... 0.03 OrthoFinder output from all 47 species
Msp_g07432 No alias component *(Sm-D3) of U1/U2/U4/U5-associated Sm... 0.06 OrthoFinder output from all 47 species
Nbi_g20365 No alias component *(Sm-D3) of U1/U2/U4/U5-associated Sm... 0.06 OrthoFinder output from all 47 species
Sam_g19523 No alias component *(Sm-D3) of U1/U2/U4/U5-associated Sm... 0.02 OrthoFinder output from all 47 species
Solyc02g062240.3.1 Solyc02g062240 component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... 0.02 OrthoFinder output from all 47 species
Spa_g23863 No alias component *(Sm-D3) of U1/U2/U4/U5-associated Sm... 0.03 OrthoFinder output from all 47 species
Spa_g35794 No alias component *(Sm-D3) of U1/U2/U4/U5-associated Sm... 0.02 OrthoFinder output from all 47 species
Tin_g01402 No alias component *(Sm-D3) of U1/U2/U4/U5-associated Sm... 0.04 OrthoFinder output from all 47 species
Zm00001e001000_P001 Zm00001e001000 component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... 0.02 OrthoFinder output from all 47 species
Zm00001e013395_P002 Zm00001e013395 component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
CC GO:0000313 organellar ribosome IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005761 mitochondrial ribosome IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
CC GO:0032299 ribonuclease H2 complex IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 11 74
No external refs found!