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  5. LOC_Os01g66970.1

LOC_Os01g66970.1 (LOC_Os01g66970)


Aliases : LOC_Os01g66970

Description : RING-v-class E3 ligase


Gene families : OG0000370 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000370_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g66970.1

Target Alias Description ECC score Gene Family Method Actions
AT2G01275 No alias RING/FYVE/PHD zinc finger superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g020403 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Als_g40952 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.11G062700.1 Ceric.11G062700 E3 ubiquitin ligase & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.23G021200.1 Ceric.23G021200 E3 ubiquitin ligase & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g09799 No alias E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g03386 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g07371 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01011789001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
Msp_g21354 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e028572_P001 Zm00001e028572 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e031477_P002 Zm00001e031477 RING-v-class E3 ligase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
CC GO:0005618 cell wall IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
CC GO:0048046 apoplast IEP HCCA
InterPro domains Description Start Stop
IPR022143 DUF3675 93 208
IPR011016 Znf_RING-CH 42 87
No external refs found!