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  5. LOC_Os01g65550.1

LOC_Os01g65550.1 (LOC_Os01g65550)


Aliases : LOC_Os01g65550

Description : Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana (sp|q9m1s3|arp1_arath : 119.0)


Gene families : OG0000717 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000717_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g65550.1
Cluster HCCA: Cluster_151

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00080p00053460 evm_27.TU.AmTr_v1... Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
AMTR_s00099p00115860 evm_27.TU.AmTr_v1... Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT1G33470 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.08 OrthoFinder output from all 47 species
Cba_g13416 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ehy_g04437 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g10873 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_30439 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_39269 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Len_g03686 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g15889 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
MA_1682g0010 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Msp_g26513 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g05687 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g05821 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g003275 No alias not classified & original description: CDS=1-1056 0.02 OrthoFinder output from all 47 species
Sam_g36028 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc04g049920.4.1 Solyc04g049920 Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e028635_P002 Zm00001e028635 Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 18 73
No external refs found!