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  5. LOC_Os01g64640.1

LOC_Os01g64640.1 (LOC_Os01g64640)


Aliases : LOC_Os01g64640

Description : histone (H3)


Gene families : OG0000128 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000128_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g64640.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00018p00168040 No alias Chromatin organisation.histones.H3-type histone 0.09 OrthoFinder output from all 47 species
AMTR_s00030p00044250 No alias Chromatin organisation.histones.H3-type histone 0.03 OrthoFinder output from all 47 species
AMTR_s00225p00023630 No alias Chromatin organisation.histones.H3-type histone 0.04 OrthoFinder output from all 47 species
AT1G09200 No alias Histone superfamily protein 0.07 OrthoFinder output from all 47 species
AT3G27360 No alias Histone superfamily protein 0.1 OrthoFinder output from all 47 species
AT4G40040 No alias Histone superfamily protein 0.06 OrthoFinder output from all 47 species
AT5G10390 No alias Histone superfamily protein 0.06 OrthoFinder output from all 47 species
AT5G10400 No alias Histone superfamily protein 0.07 OrthoFinder output from all 47 species
AT5G65360 No alias Histone superfamily protein 0.07 OrthoFinder output from all 47 species
Adi_g014653 No alias histone *(H3) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g014654 No alias histone *(H3) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g025095 No alias histone *(H3) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g26587 No alias histone *(H3) & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g30174 No alias histone *(H3) & original description: none 0.05 OrthoFinder output from all 47 species
Als_g43453 No alias histone *(H3) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g19848 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g33085 No alias histone *(H3) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene01931.t1 Aspi01Gene01931 histone *(H3) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene01978.t1 Aspi01Gene01978 histone *(H3) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene02052.t1 Aspi01Gene02052 histone *(H3) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene42452.t1 Aspi01Gene42452 histone H3 variant *(CENH3) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene58554.t1 Aspi01Gene58554 histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0045.g029851 No alias histone *(H3) & original description: CDS=112-522 0.04 OrthoFinder output from all 47 species
Ceric.06G075200.1 Ceric.06G075200 histone *(H3) & original description: pacid=50619967... 0.07 OrthoFinder output from all 47 species
Ceric.10G013500.1 Ceric.10G013500 histone *(H3) & original description: pacid=50612923... 0.1 OrthoFinder output from all 47 species
Ceric.10G015500.1 Ceric.10G015500 histone *(H3) & original description: pacid=50612308... 0.08 OrthoFinder output from all 47 species
Ceric.12G022300.1 Ceric.12G022300 histone *(H3) & original description: pacid=50601599... 0.07 OrthoFinder output from all 47 species
Ceric.14G025000.1 Ceric.14G025000 histone *(H3) & original description: pacid=50634383... 0.07 OrthoFinder output from all 47 species
Ceric.14G043400.1 Ceric.14G043400 histone *(H3) & original description: pacid=50633664... 0.05 OrthoFinder output from all 47 species
Ceric.19G072200.1 Ceric.19G072200 histone *(H3) & original description: pacid=50576221... 0.12 OrthoFinder output from all 47 species
Ceric.19G072300.1 Ceric.19G072300 histone *(H3) & original description: pacid=50576158... 0.08 OrthoFinder output from all 47 species
Ceric.1Z177000.1 Ceric.1Z177000 histone *(H3) & original description: pacid=50628432... 0.11 OrthoFinder output from all 47 species
Ceric.24G002400.1 Ceric.24G002400 histone *(H3) & original description: pacid=50629579... 0.05 OrthoFinder output from all 47 species
Ceric.27G025100.1 Ceric.27G025100 histone *(H3) & original description: pacid=50605832... 0.08 OrthoFinder output from all 47 species
Ceric.27G025200.1 Ceric.27G025200 histone *(H3) & original description: pacid=50606238... 0.07 OrthoFinder output from all 47 species
Ceric.27G026100.1 Ceric.27G026100 histone *(H3) & original description: pacid=50605944... 0.08 OrthoFinder output from all 47 species
Ceric.27G029000.1 Ceric.27G029000 histone *(H3) & original description: pacid=50605580... 0.12 OrthoFinder output from all 47 species
Ceric.27G029300.1 Ceric.27G029300 histone *(H3) & original description: pacid=50605405... 0.12 OrthoFinder output from all 47 species
Ceric.27G029400.1 Ceric.27G029400 histone *(H3) & original description: pacid=50605419... 0.07 OrthoFinder output from all 47 species
Ceric.30G057000.1 Ceric.30G057000 histone *(H3) & original description: pacid=50609365... 0.07 OrthoFinder output from all 47 species
Ceric.37G016300.1 Ceric.37G016300 histone *(H3) & original description: pacid=50616425... 0.08 OrthoFinder output from all 47 species
Cre06.g264650 No alias Chromatin organisation.histones.H3-type histone 0.08 OrthoFinder output from all 47 species
Cre06.g265250 No alias Chromatin organisation.histones.H3-type histone 0.08 OrthoFinder output from all 47 species
Cre06.g265500 No alias Chromatin organisation.histones.H3-type histone 0.03 OrthoFinder output from all 47 species
Cre06.g266650 No alias Chromatin organisation.histones.H3-type histone 0.11 OrthoFinder output from all 47 species
Cre06.g267950 No alias Chromatin organisation.histones.H3-type histone 0.13 OrthoFinder output from all 47 species
Cre06.g268350 No alias Chromatin organisation.histones.H3-type histone 0.05 OrthoFinder output from all 47 species
Cre06.g274000 No alias Chromatin organisation.histones.H3-type histone 0.13 OrthoFinder output from all 47 species
Cre06.g274101 No alias Chromatin organisation.histones.H3-type histone 0.13 OrthoFinder output from all 47 species
Cre06.g274350 No alias Chromatin organisation.histones.H3-type histone 0.13 OrthoFinder output from all 47 species
Cre06.g274850 No alias Chromatin organisation.histones.H3-type histone 0.15 OrthoFinder output from all 47 species
Cre06.g275750 No alias Chromatin organisation.histones.H3-type histone 0.14 OrthoFinder output from all 47 species
Cre06.g276600 No alias Chromatin organisation.histones.H3-type histone 0.09 OrthoFinder output from all 47 species
Cre06.g276850 No alias Chromatin organisation.histones.H3-type histone 0.12 OrthoFinder output from all 47 species
Cre12.g504650 No alias Chromatin organisation.histones.H3-type histone 0.1 OrthoFinder output from all 47 species
Cre12.g504800 No alias Chromatin organisation.histones.H3-type histone 0.11 OrthoFinder output from all 47 species
Cre12.g505500 No alias Chromatin organisation.histones.H3-type histone 0.1 OrthoFinder output from all 47 species
Cre12.g506300 No alias Chromatin organisation.histones.H3-type histone 0.1 OrthoFinder output from all 47 species
Cre12.g506500 No alias Chromatin organisation.histones.H3-type histone 0.1 OrthoFinder output from all 47 species
Cre13.g569950 No alias Chromatin organisation.histones.H3-type histone 0.13 OrthoFinder output from all 47 species
Cre16.g649900 No alias Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder output from all 47 species
Cre16.g650300 No alias Chromatin organisation.histones.H3-type histone 0.05 OrthoFinder output from all 47 species
Cre16.g661450 No alias Cell cycle.mitosis and meiosis.chromosome... 0.06 OrthoFinder output from all 47 species
Cre17.g708150 No alias Chromatin organisation.histones.H3-type histone 0.1 OrthoFinder output from all 47 species
Cre17.g708700 No alias Chromatin organisation.histones.H3-type histone 0.13 OrthoFinder output from all 47 species
Cre17.g709050 No alias Chromatin organisation.histones.H3-type histone 0.12 OrthoFinder output from all 47 species
Dac_g02480 No alias histone *(H3) & original description: none 0.06 OrthoFinder output from all 47 species
Dac_g12416 No alias histone *(H3) & original description: none 0.09 OrthoFinder output from all 47 species
Dcu_g11158 No alias histone *(H3) & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g27747 No alias histone *(H3) & original description: none 0.08 OrthoFinder output from all 47 species
Dde_g01832 No alias histone *(H3) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g47570 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g27287 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01026582001 No alias Histone H3.2 OS=Pisum sativum 0.06 OrthoFinder output from all 47 species
GSVIVT01027073001 HTR12, CENH3 Cell cycle.mitosis and meiosis.chromosome... 0.12 OrthoFinder output from all 47 species
GSVIVT01034510001 No alias Histone H3.2 OS=Pisum sativum 0.11 OrthoFinder output from all 47 species
Gb_08475 No alias histone (H3) 0.06 OrthoFinder output from all 47 species
Gb_15586 No alias histone (H3) 0.03 OrthoFinder output from all 47 species
Gb_19430 No alias histone (H3) 0.03 OrthoFinder output from all 47 species
Gb_27618 No alias histone (H3) 0.11 OrthoFinder output from all 47 species
Gb_29026 No alias histone (H3) 0.05 OrthoFinder output from all 47 species
Gb_29027 No alias histone (H3) 0.06 OrthoFinder output from all 47 species
Gb_30564 No alias histone (H3) 0.12 OrthoFinder output from all 47 species
Gb_36661 No alias histone (H3) 0.11 OrthoFinder output from all 47 species
Gb_40804 No alias histone (H3) 0.08 OrthoFinder output from all 47 species
Len_g04468 No alias histone *(H3) & original description: none 0.05 OrthoFinder output from all 47 species
Len_g05015 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g06032 No alias histone *(H3) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g26206 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g23375 No alias histone *(H3) & original description: none 0.02 OrthoFinder output from all 47 species
MA_10432805g0020 No alias histone (H3) 0.05 OrthoFinder output from all 47 species
MA_113838g0010 No alias histone (H3) 0.09 OrthoFinder output from all 47 species
MA_17527g0010 No alias histone (H3) 0.04 OrthoFinder output from all 47 species
MA_197719g0010 No alias histone (H3) 0.09 OrthoFinder output from all 47 species
MA_210354g0010 No alias histone (H3) 0.07 OrthoFinder output from all 47 species
MA_222556g0010 No alias Histone H3.2 OS=Lilium longiflorum (sp|q402e1|h32_lillo : 116.0) 0.04 OrthoFinder output from all 47 species
MA_24261g0010 No alias histone (H3) 0.04 OrthoFinder output from all 47 species
MA_356208g0010 No alias histone (H3) 0.12 OrthoFinder output from all 47 species
MA_475294g0010 No alias histone (H3) 0.03 OrthoFinder output from all 47 species
MA_561217g0010 No alias histone (H3) 0.08 OrthoFinder output from all 47 species
MA_56411g0010 No alias histone (H3) 0.08 OrthoFinder output from all 47 species
MA_74555g0010 No alias Histone H3.2 OS=Pisum sativum (sp|p68427|h32_pea : 98.2) 0.05 OrthoFinder output from all 47 species
Mp3g09090.1 No alias histone (H3) 0.08 OrthoFinder output from all 47 species
Mp7g10730.1 No alias histone (H3) 0.08 OrthoFinder output from all 47 species
Mp7g16200.1 No alias histone (H3) 0.04 OrthoFinder output from all 47 species
Mp7g18030.1 No alias histone (H3) 0.06 OrthoFinder output from all 47 species
Msp_g36081 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g41988 No alias histone *(H3) & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g07788 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g07789 No alias histone *(H3) & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g10158 No alias histone *(H3) & original description: none 0.04 OrthoFinder output from all 47 species
Pp3c20_8550V3.1 Pp3c20_8550 Histone superfamily protein 0.03 OrthoFinder output from all 47 species
Pp3c22_8680V3.1 Pp3c22_8680 Histone superfamily protein 0.01 OrthoFinder output from all 47 species
Pp3c24_13230V3.1 Pp3c24_13230 Histone superfamily protein 0.06 OrthoFinder output from all 47 species
Sam_g20165 No alias histone H3 variant *(CENH3) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g22036 No alias histone *(H3) & original description: none 0.07 OrthoFinder output from all 47 species
Smo103546 No alias Chromatin organisation.histones.H3-type histone 0.03 OrthoFinder output from all 47 species
Smo176603 No alias Chromatin organisation.histones.H3-type histone 0.03 OrthoFinder output from all 47 species
Smo269004 No alias Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder output from all 47 species
Smo438193 No alias Chromatin organisation.histones.H3-type histone 0.03 OrthoFinder output from all 47 species
Smo78992 No alias Chromatin organisation.histones.H3-type histone 0.03 OrthoFinder output from all 47 species
Solyc01g074000.3.1 Solyc01g074000 histone (H3) 0.16 OrthoFinder output from all 47 species
Solyc01g079110.4.1 Solyc01g079110 histone (H3) 0.11 OrthoFinder output from all 47 species
Solyc01g080600.4.1 Solyc01g080600 histone (H3) 0.09 OrthoFinder output from all 47 species
Solyc01g086820.4.1 Solyc01g086820 histone (H3) 0.11 OrthoFinder output from all 47 species
Solyc01g095650.4.1 HTR12, CENH3,... histone H3 variant (CENH3) 0.05 OrthoFinder output from all 47 species
Solyc02g077480.1.1 Solyc02g077480 histone (H3) 0.08 OrthoFinder output from all 47 species
Solyc05g051500.4.1 Solyc05g051500 histone (H3) 0.06 OrthoFinder output from all 47 species
Solyc10g008910.1.1 Solyc10g008910 histone (H3) 0.13 OrthoFinder output from all 47 species
Solyc11g010230.2.1 Solyc11g010230 histone (H3) 0.03 OrthoFinder output from all 47 species
Solyc12g056540.1.1 Solyc12g056540 histone (H3) 0.19 OrthoFinder output from all 47 species
Spa_g18210 No alias histone *(H3) & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g33395 No alias histone *(H3) & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g33705 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g42522 No alias histone *(H3) & original description: none 0.12 OrthoFinder output from all 47 species
Spa_g52114 No alias histone *(H3) & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g52464 No alias histone *(H3) & original description: none 0.09 OrthoFinder output from all 47 species
Spa_g56118 No alias histone *(H3) & original description: none 0.1 OrthoFinder output from all 47 species
Tin_g03087 No alias histone *(H3) & original description: none 0.07 OrthoFinder output from all 47 species
Tin_g04242 No alias histone *(H3) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g04797 No alias histone *(H3) & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g09717 No alias histone *(H3) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e001885_P003 Zm00001e001885 histone (H3) 0.04 OrthoFinder output from all 47 species
Zm00001e008155_P001 Zm00001e008155 histone (H3) 0.09 OrthoFinder output from all 47 species
Zm00001e008160_P001 Zm00001e008160 histone (H3) 0.07 OrthoFinder output from all 47 species
Zm00001e014760_P001 Zm00001e014760 histone (H3) 0.05 OrthoFinder output from all 47 species
Zm00001e016861_P001 Zm00001e016861 histone (H3) 0.11 OrthoFinder output from all 47 species
Zm00001e018263_P001 Zm00001e018263 histone (H3) 0.06 OrthoFinder output from all 47 species
Zm00001e019170_P001 Zm00001e019170 histone (H3) 0.08 OrthoFinder output from all 47 species
Zm00001e029901_P001 Zm00001e029901 histone (H3) 0.05 OrthoFinder output from all 47 species
Zm00001e036599_P001 Zm00001e036599 histone (H3) 0.07 OrthoFinder output from all 47 species
Zm00001e040856_P001 Zm00001e040856 histone (H3) 0.12 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP HCCA
MF GO:0019207 kinase regulator activity IEP HCCA
MF GO:0019887 protein kinase regulator activity IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 1 132
No external refs found!