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  5. LOC_Os01g61420.1

LOC_Os01g61420.1 (LOC_Os01g61420)


Aliases : LOC_Os01g61420

Description : RING-HC-class E3 ligase


Gene families : OG0000266 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000266_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g61420.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00048p00164020 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
AT2G44410 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g021121 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g021123 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g10922 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene53965.t1 Aspi01Gene53965 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cre17.g739100 No alias Protein degradation.peptide tagging.Ubiquitin... 0.01 OrthoFinder output from all 47 species
Dcu_g03679 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g12014 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g15941 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e027279_P001 Zm00001e027279 RING-HC-class E3 ligase 0.04 OrthoFinder output from all 47 species
Zm00001e028813_P001 Zm00001e028813 RING-HC-class E3 ligase 0.05 OrthoFinder output from all 47 species
Zm00001e031880_P001 Zm00001e031880 RING-HC-class E3 ligase 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA

No InterPro domains available for this sequence

No external refs found!