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  5. LOC_Os01g60270.1

LOC_Os01g60270.1 (ATWOX13, WOX13, HB-4,...)


Aliases : ATWOX13, WOX13, HB-4, LOC_Os01g60270

Description : transcription factor (WOX)


Gene families : OG0001388 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001388_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g60270.1
Cluster HCCA: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
Aev_g09894 ATWOX13, WOX13, HB-4 WOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g05769 ATWOX13, WOX13, HB-4 WOX-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Cba_g38567 ATWOX13, WOX13, HB-4 WOX-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Ceric.10G002900.1 ATWOX13, WOX13,... WOX-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
GSVIVT01026638001 ATWOX13, WOX13, HB-4 RNA biosynthesis.transcriptional activation.HB... 0.03 OrthoFinder output from all 47 species
Gb_17198 ATWOX13, WOX13, HB-4 transcription factor (WOX) 0.04 OrthoFinder output from all 47 species
MA_10432361g0010 ATWOX14, WOX14 transcription factor (WOX) 0.03 OrthoFinder output from all 47 species
MA_161092g0010 ATWOX14, WOX14 transcription factor (WOX) 0.03 OrthoFinder output from all 47 species
MA_8044496g0010 ATWOX14, WOX14 transcription factor (WOX) 0.03 OrthoFinder output from all 47 species
Ore_g07980 ATWOX13, WOX13, HB-4 WOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g25006 ATWOX13, WOX13, HB-4 WOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g29049 ATWOX13, WOX13, HB-4 WOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0032.g010780 ATWOX13, WOX13, HB-4 WOX-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0087.g018453 ATWOX13, WOX13, HB-4 not classified & original description: CDS=1-636 0.02 OrthoFinder output from all 47 species
Solyc02g082670.3.1 ATWOX13, WOX13,... transcription factor (WOX) 0.04 OrthoFinder output from all 47 species
Zm00001e019458_P002 ATWOX13, WOX13,... transcription factor (WOX) 0.02 OrthoFinder output from all 47 species
Zm00001e028862_P002 ATWOX13, WOX13,... transcription factor (WOX) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
CC GO:0005618 cell wall IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
CC GO:0048046 apoplast IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR001356 Homeobox_dom 90 150
No external refs found!