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  5. LOC_Os01g56520.1

LOC_Os01g56520.1 (LOC_Os01g56520)


Aliases : LOC_Os01g56520

Description : component DRB4 of DRB4-DRB7.1 siRNA biogenesis regulator complex


Gene families : OG0000404 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000404_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: LOC_Os01g56520.1

Target Alias Description ECC score Gene Family Method Actions
Aop_g05097 DRB1, HYL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g13568 DRB2 regulatory protein *(DRB2) of miRNA biogenesis pathway &... 0.03 OrthoFinder output from all 47 species
Dde_g50094 DRB2 regulatory protein *(DRB2) of miRNA biogenesis pathway &... 0.02 OrthoFinder output from all 47 species
Ehy_g22804 DRB1, HYL1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g45258 DRB3 regulatory protein *(DRB2) of miRNA biogenesis pathway &... 0.02 OrthoFinder output from all 47 species
Nbi_g02949 DRB2 regulatory protein *(DRB2) of miRNA biogenesis pathway &... 0.02 OrthoFinder output from all 47 species
Pir_g09256 DRB1, HYL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g11340 DRB2 regulatory protein *(DRB2) of miRNA biogenesis pathway &... 0.03 OrthoFinder output from all 47 species
Pir_g37490 DRB4 component *(DRB4) of DRB4-DRB7.1 siRNA biogenesis... 0.02 OrthoFinder output from all 47 species
Sam_g19793 No alias regulatory protein *(DRB2) of miRNA biogenesis pathway &... 0.02 OrthoFinder output from all 47 species
Solyc01g056620.4.1 DRB4, Solyc01g056620 component DRB4 of DRB4-DRB7.1 siRNA biogenesis regulator complex 0.03 OrthoFinder output from all 47 species
Solyc05g056100.3.1 DRB2, Solyc05g056100 Double-stranded RNA-binding protein 2 OS=Arabidopsis... 0.07 OrthoFinder output from all 47 species
Zm00001e040435_P001 DRB3, Zm00001e040435 Double-stranded RNA-binding protein 2 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR014720 dsRBD_dom 170 234
IPR014720 dsRBD_dom 2 69
IPR014720 dsRBD_dom 87 150
No external refs found!