LOC_Os01g55290.2 (emb1417, LOC_Os01g55290)


Aliases : emb1417, LOC_Os01g55290

Description : Pentatricopeptide repeat-containing protein At4g21190 OS=Arabidopsis thaliana (sp|q8lg95|pp332_arath : 280.0)


Gene families : OG0001686 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001686_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g55290.2

Target Alias Description ECC score Gene Family Method Actions
Adi_g075351 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g25612 emb1417 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g21409 emb1417 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene03710.t1 Aspi01Gene03710 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0061.g035053 emb1417 not classified & original description: CDS=134-1234 0.04 OrthoFinder output from all 47 species
Dac_g15250 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g31123 emb1417 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g33827 emb1417 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g05415 emb1417 not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10436785g0010 emb1417 Pentatricopeptide repeat-containing protein At4g21190... 0.02 OrthoFinder output from all 47 species
Nbi_g09758 emb1417 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g06884 emb1417 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g27530 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g07146 emb1417 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g16358 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0290.g027162 emb1417 not classified & original description: CDS=48-1184 0.04 OrthoFinder output from all 47 species
Sam_g09326 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g37295 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g071570.4.1 Solyc02g071570 Pentatricopeptide repeat-containing protein At4g18975,... 0.03 OrthoFinder output from all 47 species
Solyc04g056370.3.1 Solyc04g056370 Pentatricopeptide repeat-containing protein At4g18975,... 0.03 OrthoFinder output from all 47 species
Spa_g12796 emb1417 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g54750 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e019767_P001 emb1417, Zm00001e019767 Pentatricopeptide repeat-containing protein At4g21190... 0.04 OrthoFinder output from all 47 species
Zm00001e035184_P004 Zm00001e035184 Pentatricopeptide repeat-containing protein At4g18975,... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0006072 glycerol-3-phosphate metabolic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0046168 glycerol-3-phosphate catabolic process IEP HCCA
BP GO:0046434 organophosphate catabolic process IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
BP GO:0052646 alditol phosphate metabolic process IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901136 carbohydrate derivative catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 167 192
IPR002885 Pentatricopeptide_repeat 127 151
No external refs found!