Aliases : EDF2, AtRAV2, TEM2, RAV2, RAP2.8, LOC_Os01g49830
Description : transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)
Gene families : OG0000941 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000941_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: LOC_Os01g49830.1 | |
Cluster | HCCA: Cluster_57 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00018p00040300 | NGA1,... | RNA biosynthesis.transcriptional activation.B3... | 0.02 | OrthoFinder output from all 47 species | |
AT1G25560 | TEM1, EDF1 | AP2/B3 transcription factor family protein | 0.03 | OrthoFinder output from all 47 species | |
AT1G50680 | No alias | AP2/B3 transcription factor family protein | 0.02 | OrthoFinder output from all 47 species | |
AT2G36080 | No alias | AP2/B3-like transcriptional factor family protein | 0.03 | OrthoFinder output from all 47 species | |
AT2G46870 | NGA1 | AP2/B3-like transcriptional factor family protein | 0.02 | OrthoFinder output from all 47 species | |
AT3G11580 | No alias | AP2/B3-like transcriptional factor family protein | 0.04 | OrthoFinder output from all 47 species | |
AT3G25730 | EDF3 | ethylene response DNA binding factor 3 | 0.03 | OrthoFinder output from all 47 species | |
Adi_g058439 | EDF4, RAV1 | AP2-RAV-type transcription factor *(EDF) & original... | 0.04 | OrthoFinder output from all 47 species | |
Adi_g114045 | NGA1 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Aev_g32030 | EDF4, RAV1 | AP2-RAV-type transcription factor *(EDF) & original... | 0.03 | OrthoFinder output from all 47 species | |
Aev_g44854 | EDF4, RAV1 | AP2-RAV-type transcription factor *(EDF) & original... | 0.04 | OrthoFinder output from all 47 species | |
Ala_g04648 | TEM1, EDF1 | AP2-RAV-type transcription factor *(EDF) & original... | 0.02 | OrthoFinder output from all 47 species | |
Aob_g11266 | EDF4, RAV1 | AP2-RAV-type transcription factor *(EDF) & original... | 0.04 | OrthoFinder output from all 47 species | |
Aspi01Gene28731.t1 | TEM1, EDF1,... | AP2-RAV-type transcription factor *(EDF) & original... | 0.02 | OrthoFinder output from all 47 species | |
Azfi_s0068.g036380 | EDF4, RAV1 | AP2-RAV-type transcription factor *(EDF) & original... | 0.05 | OrthoFinder output from all 47 species | |
Cba_g71540 | EDF4, RAV1 | AP2-RAV-type transcription factor *(EDF) & original... | 0.02 | OrthoFinder output from all 47 species | |
Ceric.11G039200.1 | EDF4, RAV1,... | AP2-RAV-type transcription factor *(EDF) & original... | 0.03 | OrthoFinder output from all 47 species | |
Ceric.22G022700.1 | TEM1, EDF1,... | AP2-RAV-type transcription factor *(EDF) & original... | 0.03 | OrthoFinder output from all 47 species | |
Dac_g22480 | EDF4, RAV1 | AP2-RAV-type transcription factor *(EDF) & original... | 0.04 | OrthoFinder output from all 47 species | |
Dac_g39956 | TEM1, EDF1 | AP2-RAV-type transcription factor *(EDF) & original... | 0.02 | OrthoFinder output from all 47 species | |
Dac_g43760 | EDF2, AtRAV2,... | AP2-RAV-type transcription factor *(EDF) & original... | 0.02 | OrthoFinder output from all 47 species | |
Dcu_g04025 | EDF4, RAV1 | AP2-RAV-type transcription factor *(EDF) & original... | 0.03 | OrthoFinder output from all 47 species | |
Dde_g25414 | TEM1, EDF1 | AP2-RAV-type transcription factor *(EDF) & original... | 0.02 | OrthoFinder output from all 47 species | |
Dde_g29898 | NGA3 | RAV/NGATHA-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Dde_g48458 | EDF4, RAV1 | AP2-RAV-type transcription factor *(EDF) & original... | 0.02 | OrthoFinder output from all 47 species | |
Ehy_g00006 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ehy_g16987 | EDF4, RAV1 | AP2-RAV-type transcription factor *(EDF) & original... | 0.04 | OrthoFinder output from all 47 species | |
GSVIVT01011947001 | EDF2, AtRAV2,... | RNA biosynthesis.transcriptional activation.B3... | 0.04 | OrthoFinder output from all 47 species | |
GSVIVT01023582001 | No alias | RNA biosynthesis.transcriptional activation.AP2/ERF... | 0.04 | OrthoFinder output from all 47 species | |
GSVIVT01027463001 | NGA1 | RNA biosynthesis.transcriptional activation.B3... | 0.02 | OrthoFinder output from all 47 species | |
GSVIVT01033902001 | No alias | RNA biosynthesis.transcriptional activation.B3... | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01036447001 | EDF4, RAV1 | RNA biosynthesis.transcriptional activation.AP2/ERF... | 0.05 | OrthoFinder output from all 47 species | |
Gb_18035 | EDF4, RAV1 | transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os06g01860.1 | LOC_Os06g01860 | transcription factor (RAV/NGATHA) | 0.04 | OrthoFinder output from all 47 species | |
LOC_Os10g39190.1 | NGA1, LOC_Os10g39190 | transcription factor (RAV/NGATHA) | 0.04 | OrthoFinder output from all 47 species | |
LOC_Os12g06080.1 | LOC_Os12g06080 | transcription factor (RAV/NGATHA) | 0.04 | OrthoFinder output from all 47 species | |
Len_g14264 | EDF4, RAV1 | AP2-RAV-type transcription factor *(EDF) & original... | 0.05 | OrthoFinder output from all 47 species | |
Len_g36994 | EDF4, RAV1 | AP2-RAV-type transcription factor *(EDF) & original... | 0.04 | OrthoFinder output from all 47 species | |
Lfl_g21540 | NGA1 | RAV/NGATHA-type transcription factor & original description: none | 0.05 | OrthoFinder output from all 47 species | |
MA_10436315g0010 | EDF2, AtRAV2,... | transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) | 0.05 | OrthoFinder output from all 47 species | |
MA_116574g0010 | EDF3 | transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) | 0.03 | OrthoFinder output from all 47 species | |
MA_18923g0010 | EDF4, RAV1 | transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) | 0.02 | OrthoFinder output from all 47 species | |
MA_23673g0010 | EDF4, RAV1 | transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) | 0.03 | OrthoFinder output from all 47 species | |
MA_246350g0010 | EDF4, RAV1 | transcription factor (RAV/NGATHA) | 0.06 | OrthoFinder output from all 47 species | |
MA_3834g0010 | EDF2, AtRAV2,... | transcription factor (RAV/NGATHA) | 0.04 | OrthoFinder output from all 47 species | |
MA_70029g0010 | NGA1 | transcription factor (RAV/NGATHA) | 0.02 | OrthoFinder output from all 47 species | |
MA_865117g0010 | EDF4, RAV1 | transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) | 0.03 | OrthoFinder output from all 47 species | |
MA_94318g0010 | TEM1, EDF1 | transcription factor (AP2-RAV) | 0.03 | OrthoFinder output from all 47 species | |
Mp2g22250.1 | EDF4, RAV1 | transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) | 0.03 | OrthoFinder output from all 47 species | |
Msp_g47465 | EDF4, RAV1 | AP2-RAV-type transcription factor *(EDF) & original... | 0.04 | OrthoFinder output from all 47 species | |
Nbi_g11598 | EDF4, RAV1 | AP2-RAV-type transcription factor *(EDF) & original... | 0.04 | OrthoFinder output from all 47 species | |
Pnu_g09403 | EDF4, RAV1 | AP2-RAV-type transcription factor *(EDF) & original... | 0.03 | OrthoFinder output from all 47 species | |
Pnu_g19474 | EDF4, RAV1 | AP2-RAV-type transcription factor *(EDF) & original... | 0.02 | OrthoFinder output from all 47 species | |
Pnu_g22199 | EDF4, RAV1 | AP2-RAV-type transcription factor *(EDF) & original... | 0.05 | OrthoFinder output from all 47 species | |
Sam_g30092 | No alias | AP2-RAV-type transcription factor *(EDF) & original... | 0.02 | OrthoFinder output from all 47 species | |
Solyc05g004000.1.1 | NGA1, Solyc05g004000 | transcription factor (RAV/NGATHA) | 0.04 | OrthoFinder output from all 47 species | |
Solyc05g009790.1.1 | EDF4, RAV1,... | transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) | 0.03 | OrthoFinder output from all 47 species | |
Solyc08g013690.1.1 | NGA3, Solyc08g013690 | transcription factor (RAV/NGATHA) | 0.03 | OrthoFinder output from all 47 species | |
Solyc09g010230.2.1 | Solyc09g010230 | transcription factor (RAV/NGATHA) | 0.03 | OrthoFinder output from all 47 species | |
Solyc10g083210.2.1 | Solyc10g083210 | transcription factor (RAV/NGATHA) | 0.03 | OrthoFinder output from all 47 species | |
Solyc12g098460.2.1 | Solyc12g098460 | AP2/ERF and B3 domain-containing transcription factor... | 0.03 | OrthoFinder output from all 47 species | |
Spa_g28812 | EDF2, AtRAV2,... | AP2-RAV-type transcription factor *(EDF) & original... | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e000156_P001 | NGA3, Zm00001e000156 | transcription factor (RAV/NGATHA) | 0.01 | OrthoFinder output from all 47 species | |
Zm00001e016956_P001 | EDF2, AtRAV2,... | transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) | 0.05 | OrthoFinder output from all 47 species | |
Zm00001e020092_P001 | EDF2, AtRAV2,... | transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e024165_P001 | Zm00001e024165 | transcription factor (RAV/NGATHA) | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e026443_P001 | EDF2, AtRAV2,... | transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) | 0.04 | OrthoFinder output from all 47 species | |
Zm00001e028111_P001 | EDF2, AtRAV2,... | transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) | 0.06 | OrthoFinder output from all 47 species | |
Zm00001e032325_P001 | EDF2, AtRAV2,... | transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) | 0.06 | OrthoFinder output from all 47 species | |
Zm00001e040214_P001 | NGA3, Zm00001e040214 | transcription factor (RAV/NGATHA) | 0.03 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003677 | DNA binding | IEA | Interproscan |
MF | GO:0003700 | DNA-binding transcription factor activity | IEA | Interproscan |
BP | GO:0006355 | regulation of DNA-templated transcription | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No Predicted GO terms available for this sequence |
No external refs found! |