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  5. LOC_Os01g48210.1

LOC_Os01g48210.1 (LOC_Os01g48210)


Aliases : LOC_Os01g48210

Description : poly(A) RNA polymerase (TRF4)


Gene families : OG0001897 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001897_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g48210.1

Target Alias Description ECC score Gene Family Method Actions
Aop_g11641 No alias nucleotidyl transferase component *(TRL) of TRAMP... 0.03 OrthoFinder output from all 47 species
Aop_g12669 No alias nucleotidyl transferase component *(TRL) of TRAMP... 0.02 OrthoFinder output from all 47 species
Ceric.29G060500.1 Ceric.29G060500 nucleotidyl transferase component *(TRL) of TRAMP... 0.02 OrthoFinder output from all 47 species
Ceric.30G048000.1 MEE44, Ceric.30G048000 nucleotidyl transferase component *(TRL) of TRAMP... 0.02 OrthoFinder output from all 47 species
Cre09.g410500 No alias No description available 0.03 OrthoFinder output from all 47 species
Dde_g19706 No alias nucleotidyl transferase component *(TRL) of TRAMP... 0.03 OrthoFinder output from all 47 species
Ehy_g03821 No alias nucleotidyl transferase component *(TRL) of TRAMP... 0.03 OrthoFinder output from all 47 species
Mp3g05650.1 No alias poly(A) RNA polymerase (TRF4) 0.04 OrthoFinder output from all 47 species
Mp6g17640.1 No alias poly(A) RNA polymerase (TRF4) 0.04 OrthoFinder output from all 47 species
Msp_g25456 No alias nucleotidyl transferase component *(TRL) of TRAMP... 0.03 OrthoFinder output from all 47 species
Nbi_g07177 No alias nucleotidyl transferase component *(TRL) of TRAMP... 0.02 OrthoFinder output from all 47 species
Ppi_g42208 No alias nucleotidyl transferase component *(TRL) of TRAMP... 0.02 OrthoFinder output from all 47 species
Sam_g14906 No alias nucleotidyl transferase component *(TRL) of TRAMP... 0.02 OrthoFinder output from all 47 species
Solyc10g006990.3.1 Solyc10g006990 poly(A) RNA polymerase (TRF4) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0016779 nucleotidyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002098 tRNA wobble uridine modification IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
CC GO:0033588 elongator holoenzyme complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002058 PAP_assoc 387 445
IPR002934 Polymerase_NTP_transf_dom 221 310
No external refs found!