LOC_Os01g45060.1 (LOC_Os01g45060)

Aliases : LOC_Os01g45060

Description : Polygalacturonase At1g48100 OS=Arabidopsis thaliana (sp|q949z1|pglr4_arath : 258.0) & Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase(50.3.2 : 202.2)

Gene families : OG0000452 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000452_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os01g45060.1
Cluster	HCCA: Cluster_98

Target	Alias	Description	ECC score	Gene Family Method	Actions
AT5G17200	No alias	Pectin lyase-like superfamily protein	0.05	OrthoFinder output from all 47 species
Zm00001e006097_P001	ADPG2, PGAZAT,...	polygalacturonase (QRT2)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
MF	GO:0004650	polygalacturonase activity	IEA	Interproscan
BP	GO:0005975	carbohydrate metabolic process	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0030246	carbohydrate binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000743	Glyco_hydro_28	87	374

External Links

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LOC_Os01g45060.1 (LOC_Os01g45060)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation