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  5. LOC_Os01g43070.1

LOC_Os01g43070.1 (LOC_Os01g43070)


Aliases : LOC_Os01g43070

Description : PsbP domain-containing protein 5, chloroplastic OS=Arabidopsis thaliana (sp|p82715|ppd5_arath : 277.0)


Gene families : OG0010137 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0010137_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g43070.1

Target Alias Description ECC score Gene Family Method Actions
AT5G11450 No alias Mog1/PsbP/DUF1795-like photosystem II reaction center... 0.14 OrthoFinder output from all 47 species
Cpa|evm.model.tig00022075.8 No alias No description available 0.04 OrthoFinder output from all 47 species
Cre07.g328200 No alias PsbP domain-containing protein 5, chloroplastic... 0.03 OrthoFinder output from all 47 species
Ehy_g09733 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01035726001 No alias PsbP domain-containing protein 5, chloroplastic... 0.11 OrthoFinder output from all 47 species
Gb_00451 No alias PsbP domain-containing protein 5, chloroplastic... 0.03 OrthoFinder output from all 47 species
MA_804174g0010 No alias PsbP domain-containing protein 5, chloroplastic... 0.02 OrthoFinder output from all 47 species
Mp1g00680.1 No alias PsbP domain-containing protein 5, chloroplastic... 0.05 OrthoFinder output from all 47 species
Ore_g10404 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc08g067840.3.1 Solyc08g067840 PsbP domain-containing protein 5, chloroplastic... 0.09 OrthoFinder output from all 47 species
Zm00001e020457_P002 Zm00001e020457 PsbP domain-containing protein 5, chloroplastic... 0.08 OrthoFinder output from all 47 species
Zm00001e027880_P001 Zm00001e027880 PsbP domain-containing protein 5, chloroplastic... 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEA Interproscan
CC GO:0009523 photosystem II IEA Interproscan
CC GO:0009654 photosystem II oxygen evolving complex IEA Interproscan
BP GO:0015979 photosynthesis IEA Interproscan
CC GO:0019898 extrinsic component of membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006072 glycerol-3-phosphate metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046168 glycerol-3-phosphate catabolic process IEP HCCA
BP GO:0046434 organophosphate catabolic process IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0052646 alditol phosphate metabolic process IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901136 carbohydrate derivative catabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002683 PsbP_C 159 296
No external refs found!