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  5. LOC_Os01g42970.1

LOC_Os01g42970.1 (HUA1, LOC_Os01g42970)


Aliases : HUA1, LOC_Os01g42970

Description : C3H zinc finger transcription factor


Gene families : OG0002527 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002527_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g42970.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00115p00126760 HUA1,... RNA biosynthesis.transcriptional activation.C3H zinc... 0.03 OrthoFinder output from all 47 species
Aspi01Gene47178.t1 HUA1, Aspi01Gene47178 regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0068.g036245 HUA1 regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0075.g037599 HUA1 regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Dcu_g10399 HUA1 regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Len_g30979 HUA1 regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
MA_8911g0010 HUA1 C3H zinc finger transcription factor 0.04 OrthoFinder output from all 47 species
Mp7g15840.1 HUA1 C3H zinc finger transcription factor 0.04 OrthoFinder output from all 47 species
Msp_g10720 HUA1 regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Msp_g37909 HUA1 regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Solyc12g017410.2.1 HUA1, Solyc12g017410 C3H zinc finger transcription factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
MF GO:0016409 palmitoyltransferase activity IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 426 449
IPR000571 Znf_CCCH 290 314
IPR000571 Znf_CCCH 107 132
IPR000571 Znf_CCCH 212 236
IPR000571 Znf_CCCH 158 183
IPR000571 Znf_CCCH 371 393
No external refs found!