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  5. LOC_Os01g42260.1

LOC_Os01g42260.1 (LUG, RON2, LOC_Os01g42260)


Aliases : LUG, RON2, LOC_Os01g42260

Description : transcriptional co-repressor (LUG)


Gene families : OG0000790 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000790_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g42260.1
Cluster HCCA: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00122p00094620 LUG, RON2,... RNA biosynthesis.transcriptional repression.LUG... 0.08 OrthoFinder output from all 47 species
AT2G32700 LUH LEUNIG_homolog 0.04 OrthoFinder output from all 47 species
Adi_g011009 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.05 OrthoFinder output from all 47 species
Adi_g105962 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.03 OrthoFinder output from all 47 species
Als_g29035 LUG, RON2 EC_2.7 transferase transferring phosphorus-containing... 0.07 OrthoFinder output from all 47 species
Als_g54967 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.02 OrthoFinder output from all 47 species
Als_g61871 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.05 OrthoFinder output from all 47 species
Aop_g22303 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.01 OrthoFinder output from all 47 species
Aspi01Gene45685.t2 LUG, RON2,... component *(LUG/LUH) of transcriptional co-repressor... 0.04 OrthoFinder output from all 47 species
Azfi_s0010.g012114 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.06 OrthoFinder output from all 47 species
Azfi_s0074.g037523 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.02 OrthoFinder output from all 47 species
Ceric.35G054400.1 LUG, RON2,... component *(LUG/LUH) of transcriptional co-repressor... 0.07 OrthoFinder output from all 47 species
Dcu_g39318 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.03 OrthoFinder output from all 47 species
Dde_g23584 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.02 OrthoFinder output from all 47 species
Ehy_g07081 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.03 OrthoFinder output from all 47 species
Ehy_g08626 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.03 OrthoFinder output from all 47 species
Ehy_g09952 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.04 OrthoFinder output from all 47 species
GSVIVT01015458001 LUG, RON2 RNA biosynthesis.transcriptional repression.LUG... 0.05 OrthoFinder output from all 47 species
GSVIVT01035790001 LUG, RON2 RNA biosynthesis.transcriptional repression.LUG... 0.03 OrthoFinder output from all 47 species
GSVIVT01035791001 LUG, RON2 RNA biosynthesis.transcriptional repression.LUG... 0.04 OrthoFinder output from all 47 species
Gb_02946 LUG, RON2 transcriptional co-repressor (LUG) 0.05 OrthoFinder output from all 47 species
Gb_10347 LUG, RON2 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Len_g06743 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.03 OrthoFinder output from all 47 species
Len_g22762 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.02 OrthoFinder output from all 47 species
MA_65863g0010 LUH transcriptional co-repressor (LUG) 0.02 OrthoFinder output from all 47 species
Ore_g06587 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.09 OrthoFinder output from all 47 species
Pp3c2_31700V3.1 LUG, RON2, Pp3c2_31700 LisH dimerisation motif;WD40/YVTN repeat-like-containing domain 0.01 OrthoFinder output from all 47 species
Sam_g11604 No alias component *(LUG/LUH) of transcriptional co-repressor... 0.05 OrthoFinder output from all 47 species
Sam_g13678 No alias component *(LUG/LUH) of transcriptional co-repressor... 0.05 OrthoFinder output from all 47 species
Solyc02g078000.2.1 LUH, Solyc02g078000 transcriptional co-repressor (LUG) 0.03 OrthoFinder output from all 47 species
Solyc06g065640.3.1 LUG, RON2, Solyc06g065640 transcriptional co-repressor (LUG) 0.03 OrthoFinder output from all 47 species
Zm00001e016200_P001 LUH, Zm00001e016200 transcriptional co-repressor (LUG) 0.03 OrthoFinder output from all 47 species
Zm00001e020658_P005 LUG, RON2, Zm00001e020658 transcriptional co-repressor (LUG) 0.12 OrthoFinder output from all 47 species
Zm00001e027845_P004 LUG, RON2, Zm00001e027845 transcriptional co-repressor (LUG) 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
InterPro domains Description Start Stop
IPR006594 LisH 10 36
IPR001680 WD40_repeat 669 705
IPR001680 WD40_repeat 624 661
IPR001680 WD40_repeat 592 617
IPR001680 WD40_repeat 754 789
No external refs found!