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  5. LOC_Os01g41030.1

LOC_Os01g41030.1 (LOC_Os01g41030)


Aliases : LOC_Os01g41030

Description : no hits & (original description: none)


Gene families : OG0004497 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004497_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g41030.1
Cluster HCCA: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
AT4G23620 No alias Ribosomal protein L25/Gln-tRNA synthetase,... 0.08 OrthoFinder output from all 47 species
AT5G66860 No alias Ribosomal protein L25/Gln-tRNA synthetase,... 0.06 OrthoFinder output from all 47 species
Ala_g21643 No alias component *(bL25m) of large mitoribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Als_g21820 No alias component *(bL25m) of large mitoribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Aop_g01080 No alias component *(bL25m) of large mitoribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ceric.10G035800.1 Ceric.10G035800 component *(bL25m) of large mitoribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Cre02.g081450 No alias No description available 0.05 OrthoFinder output from all 47 species
Dac_g03620 No alias component *(bL25m) of large mitoribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Gb_39985 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Gb_39986 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Mp5g00210.1 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Nbi_g00806 No alias component *(bL25m) of large mitoribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Sam_g12892 No alias component *(bL25m) of large mitoribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Solyc02g090420.2.1 Solyc02g090420 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Solyc11g018560.2.1 Solyc11g018560 no hits & (original description: none) 0.14 OrthoFinder output from all 47 species
Zm00001e012441_P002 Zm00001e012441 no hits & (original description: none) 0.09 OrthoFinder output from all 47 species
Zm00001e027819_P001 Zm00001e027819 no hits & (original description: none) 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
MF GO:0008097 5S rRNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR020057 Ribosomal_L25_b-dom 180 261
IPR029751 Ribosomal_L25 68 170
No external refs found!