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  5. LOC_Os01g24920.1

LOC_Os01g24920.1 (ATPARP1, PARP1, PP,...)


Aliases : ATPARP1, PARP1, PP, APP, LOC_Os01g24920

Description : Poly [ADP-ribose] polymerase 2-B OS=Oryza sativa subsp. japonica (sp|q0jmy1|prp2b_orysj : 715.0)


Gene families : OG0001236 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001236_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g24920.1

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020553.257 ATPARP2, PARP2 Protein modification.ADP-ribosylation.poly(ADP-ribose)... 0.02 OrthoFinder output from all 47 species
Ehy_g25108 ATPARP2, PARP2 EC_2.4 glycosyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01028029001 ATPARP1, PARP1, PP, APP Protein modification.ADP-ribosylation.poly(ADP-ribose)... 0.04 OrthoFinder output from all 47 species
Lfl_g04228 ATPARP2, PARP2 EC_2.4 glycosyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0527.g027463 ATPARP2, PARP2 not classified & original description: CDS=1-273 0.04 OrthoFinder output from all 47 species
Sam_g13562 No alias EC_2.4 glycosyltransferase & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e026278_P001 ATPARP1, PARP1,... Poly [ADP-ribose] polymerase 2 OS=Zea mays... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEA Interproscan
BP GO:0006471 obsolete protein ADP-ribosylation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008175 tRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR004102 Poly(ADP-ribose)pol_reg_dom 245 373
IPR008893 WGR_domain 157 199
No external refs found!