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  5. LOC_Os01g19130.1

LOC_Os01g19130.1 (LOC_Os01g19130)


Aliases : LOC_Os01g19130

Description : transcription factor (DBP)


Gene families : OG0000632 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000632_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g19130.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00195190 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.DBP... 0.04 OrthoFinder output from all 47 species
AMTR_s00122p00108900 AtDBP1, DBP1,... RNA biosynthesis.transcriptional activation.DBP... 0.03 OrthoFinder output from all 47 species
AT3G62260 No alias Protein phosphatase 2C family protein 0.04 OrthoFinder output from all 47 species
Adi_g023836 No alias clade G phosphatase *(DBP) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g057511 No alias clade G phosphatase *(DBP) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g065482 AtDBP1, DBP1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g066815 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g26423 No alias clade G phosphatase *(DBP) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g23337 AtDBP1, DBP1 clade G phosphatase *(DBP) & original description: none 0.05 OrthoFinder output from all 47 species
Als_g51622 No alias clade G phosphatase *(DBP) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g22591 AtDBP1, DBP1 clade G phosphatase *(DBP) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g01725 No alias clade G phosphatase *(DBP) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g07787 No alias clade G phosphatase *(DBP) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene03511.t1 Aspi01Gene03511 clade G phosphatase *(DBP) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene05677.t1 AtDBP1, DBP1,... clade G phosphatase *(DBP) & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0009.g011842 No alias clade G phosphatase *(DBP) & original description: CDS=403-1362 0.03 OrthoFinder output from all 47 species
Azfi_s3252.g115111 No alias clade G phosphatase *(DBP) & original description: CDS=374-1630 0.03 OrthoFinder output from all 47 species
Ceric.09G079600.1 AtDBP1, DBP1,... clade G phosphatase *(DBP) & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.28G001300.1 AtDBP1, DBP1,... clade G phosphatase *(DBP) & original description:... 0.04 OrthoFinder output from all 47 species
Dac_g45651 No alias clade G phosphatase *(DBP) & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g19762 No alias clade G phosphatase *(DBP) & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g09598 No alias clade G phosphatase *(DBP) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g21633 No alias clade G phosphatase *(DBP) & original description: none 0.06 OrthoFinder output from all 47 species
Ehy_g07905 No alias clade G phosphatase *(DBP) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01017639001 No alias RNA biosynthesis.transcriptional activation.DBP... 0.11 OrthoFinder output from all 47 species
GSVIVT01028192001 No alias RNA biosynthesis.transcriptional activation.DBP... 0.05 OrthoFinder output from all 47 species
Gb_16142 No alias transcription factor (DBP). clade G phosphatase 0.06 OrthoFinder output from all 47 species
LOC_Os10g39540.1 LOC_Os10g39540 transcription factor (DBP). clade G phosphatase 0.02 OrthoFinder output from all 47 species
Len_g08148 AtDBP1, DBP1 clade G phosphatase *(DBP) & original description: none 0.05 OrthoFinder output from all 47 species
Len_g55507 No alias clade G phosphatase *(DBP) & original description: none 0.04 OrthoFinder output from all 47 species
MA_13571g0010 No alias transcription factor (DBP). clade G phosphatase 0.02 OrthoFinder output from all 47 species
MA_16483g0010 No alias transcription factor (DBP) 0.03 OrthoFinder output from all 47 species
Msp_g19202 No alias clade G phosphatase *(DBP) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g03229 AtDBP1, DBP1 clade G phosphatase *(DBP) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g49420 No alias clade G phosphatase *(DBP) & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g09780 No alias clade G phosphatase *(DBP) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g068000.4.1 Solyc01g068000 transcription factor (DBP) 0.04 OrthoFinder output from all 47 species
Solyc02g038807.1.1 Solyc02g038807 transcription factor (DBP). clade G phosphatase 0.03 OrthoFinder output from all 47 species
Solyc02g082490.4.1 Solyc02g082490 transcription factor (DBP). clade G phosphatase 0.03 OrthoFinder output from all 47 species
Solyc05g053290.3.1 Solyc05g053290 transcription factor (DBP) 0.05 OrthoFinder output from all 47 species
Solyc06g009390.3.1 Solyc06g009390 transcription factor (DBP) 0.05 OrthoFinder output from all 47 species
Spa_g22865 AtDBP1, DBP1 clade G phosphatase *(DBP) & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g24550 AtDBP1, DBP1 clade G phosphatase *(DBP) & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g46551 AtDBP1, DBP1 clade G phosphatase *(DBP) & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g54548 No alias clade G phosphatase *(DBP) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g57303 AtDBP1, DBP1 clade G phosphatase *(DBP) & original description: none 0.08 OrthoFinder output from all 47 species
Tin_g27710 No alias clade G phosphatase *(DBP) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e025432_P001 Zm00001e025432 transcription factor (DBP) 0.12 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001932 PPM-type_phosphatase-like_dom 79 331
No external refs found!