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  5. LOC_Os01g13730.1

LOC_Os01g13730.1 (LOC_Os01g13730)


Aliases : LOC_Os01g13730

Description : SSU processome assembly factor (SOF1)


Gene families : OG0004632 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004632_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g13730.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00202190 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
AT4G28450 No alias nucleotide binding;protein binding 0.07 OrthoFinder output from all 47 species
Adi_g016251 No alias SSU processome assembly factor *(SOF1) & original... 0.02 OrthoFinder output from all 47 species
Aop_g11970 No alias SSU processome assembly factor *(SOF1) & original... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000269.111 No alias COMPASS-like H3K4 histone methylase component WDR5A... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000615.67 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
Cre07.g318702 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
GSVIVT01020601001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder output from all 47 species
Lfl_g14091 No alias SSU processome assembly factor *(SOF1) & original... 0.03 OrthoFinder output from all 47 species
Solyc07g053660.3.1 Solyc07g053660 SSU processome assembly factor (SOF1) 0.04 OrthoFinder output from all 47 species
Zm00001e006402_P001 Zm00001e006402 SSU processome assembly factor (SOF1) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR007287 Sof1 361 447
IPR001680 WD40_repeat 62 95
IPR001680 WD40_repeat 286 316
IPR001680 WD40_repeat 101 137
IPR001680 WD40_repeat 331 360
No external refs found!