LOC_Os01g12940.1 (LOC_Os01g12940)

Aliases : LOC_Os01g12940

Description : Bark storage protein A OS=Populus deltoides (sp|q07469|bspa_popde : 108.0)

Gene families : OG0002104 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002104_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os01g12940.1
Cluster	HCCA: Cluster_22

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00109p00104440	evm_27.TU.AmTr_v1...	No description available	0.03	OrthoFinder output from all 47 species
AMTR_s00109p00105850	evm_27.TU.AmTr_v1...	Bark storage protein A OS=Populus deltoides	0.04	OrthoFinder output from all 47 species
AT4G24340	No alias	Phosphorylase superfamily protein	0.03	OrthoFinder output from all 47 species
AT4G24350	No alias	Phosphorylase superfamily protein	0.08	OrthoFinder output from all 47 species
AT4G28940	No alias	Phosphorylase superfamily protein	0.04	OrthoFinder output from all 47 species
Aev_g05256	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene41703.t1	Aspi01Gene41703	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Azfi_s1035.g095889	No alias	not classified & original description: CDS=82-1119	0.03	OrthoFinder output from all 47 species
Cba_g14092	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g26144	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.07G002800.1	Ceric.07G002800	not classified & original description: pacid=50628008...	0.03	OrthoFinder output from all 47 species
Dac_g38405	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g20365	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Dcu_g45137	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g26059	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01035644001	No alias	Bark storage protein A OS=Populus deltoides	0.03	OrthoFinder output from all 47 species
Gb_28226	No alias	Bark storage protein A OS=Populus deltoides...	0.07	OrthoFinder output from all 47 species
LOC_Os05g13970.1	LOC_Os05g13970	Bark storage protein A OS=Populus deltoides...	0.05	OrthoFinder output from all 47 species
Lfl_g24489	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g27634	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
MA_10428395g0010	No alias	Bark storage protein A OS=Populus deltoides...	0.03	OrthoFinder output from all 47 species
Msp_g16444	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g11202	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g19666	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012115	No alias	not classified & original description: CDS=412-1434	0.08	OrthoFinder output from all 47 species
Sam_g29010	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g39646	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g40285	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g51598	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Solyc11g007730.2.1	Solyc11g007730	Bark storage protein A OS=Populus deltoides...	0.01	OrthoFinder output from all 47 species
Zm00001e036682_P001	Zm00001e036682	Bark storage protein B OS=Populus deltoides...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009116	nucleoside metabolic process	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901657	glycosyl compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003700	DNA-binding transcription factor activity	IEP	HCCA
MF	GO:0003864	3-methyl-2-oxobutanoate hydroxymethyltransferase activity	IEP	HCCA
MF	GO:0005507	copper ion binding	IEP	HCCA
BP	GO:0006082	organic acid metabolic process	IEP	HCCA
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	HCCA
BP	GO:0006766	vitamin metabolic process	IEP	HCCA
BP	GO:0006767	water-soluble vitamin metabolic process	IEP	HCCA
BP	GO:0006835	dicarboxylic acid transport	IEP	HCCA
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	HCCA
BP	GO:0009110	vitamin biosynthetic process	IEP	HCCA
BP	GO:0015711	organic anion transport	IEP	HCCA
BP	GO:0015740	C4-dicarboxylate transport	IEP	HCCA
BP	GO:0015743	malate transport	IEP	HCCA
BP	GO:0015849	organic acid transport	IEP	HCCA
BP	GO:0015939	pantothenate metabolic process	IEP	HCCA
BP	GO:0015940	pantothenate biosynthetic process	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016742	hydroxymethyl-, formyl- and related transferase activity	IEP	HCCA
MF	GO:0016757	glycosyltransferase activity	IEP	HCCA
MF	GO:0016830	carbon-carbon lyase activity	IEP	HCCA
MF	GO:0016831	carboxy-lyase activity	IEP	HCCA
BP	GO:0019752	carboxylic acid metabolic process	IEP	HCCA
MF	GO:0030170	pyridoxal phosphate binding	IEP	HCCA
BP	GO:0042364	water-soluble vitamin biosynthetic process	IEP	HCCA
BP	GO:0042398	cellular modified amino acid biosynthetic process	IEP	HCCA
BP	GO:0043436	oxoacid metabolic process	IEP	HCCA
MF	GO:0045735	nutrient reservoir activity	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
BP	GO:0046942	carboxylic acid transport	IEP	HCCA
BP	GO:0050789	regulation of biological process	IEP	HCCA
BP	GO:0050794	regulation of cellular process	IEP	HCCA
BP	GO:0055114	obsolete oxidation-reduction process	IEP	HCCA
BP	GO:0065007	biological regulation	IEP	HCCA
MF	GO:0070279	vitamin B6 binding	IEP	HCCA
BP	GO:0072330	monocarboxylic acid biosynthetic process	IEP	HCCA
MF	GO:0140110	transcription regulator activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000845	Nucleoside_phosphorylase_d	19	286

External Links

No external refs found!

LOC_Os01g12940.1 (LOC_Os01g12940)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation