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  5. LOC_Os01g12540.1

LOC_Os01g12540.1 (LOC_Os01g12540)


Aliases : LOC_Os01g12540

Description : no hits & (original description: none)


Gene families : OG0004671 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004671_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g12540.1

Target Alias Description ECC score Gene Family Method Actions
AT5G39960 No alias GTP binding;GTP binding 0.03 OrthoFinder output from all 47 species
Aop_g19619 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g14837 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
GSVIVT01018503001 No alias No description available 0.02 OrthoFinder output from all 47 species
Gb_22088 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Lfl_g06671 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Mp3g02980.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp3g02990.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Ppi_g17506 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g15916 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc10g005910.2.1 Solyc10g005910 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e016417_P001 Zm00001e016417 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
MF GO:0017150 tRNA dihydrouridine synthase activity IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0106413 dihydrouridine synthase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR032859 KH_dom-like 272 351
IPR006073 GTP-bd 87 210
No external refs found!