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  5. LOC_Os01g11120.1

LOC_Os01g11120.1 (CID9, LOC_Os01g11120)


Aliases : CID9, LOC_Os01g11120

Description : Polyadenylate-binding protein-interacting protein 9 OS=Arabidopsis thaliana (sp|q9lrr6|cid9_arath : 349.0)


Gene families : OG0000804 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000804_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g11120.1
Cluster HCCA: Cluster_323

Target Alias Description ECC score Gene Family Method Actions
AT3G49390 CID10 CTC-interacting domain 10 0.02 OrthoFinder output from all 47 species
Adi_g088809 CID12, ATRBP37, RBP37 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g117217 CID11 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g13697 CID12, ATRBP37, RBP37 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g01661 CID12, ATRBP37, RBP37 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g04863 CID12, ATRBP37, RBP37 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene01762.t1 CID12, ATRBP37,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene01762.t2 CID12, ATRBP37,... not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene26585.t1 CID11, Aspi01Gene26585 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Azfi_s0006.g010001 CID12, ATRBP37, RBP37 not classified & original description: CDS=423-1628 0.02 OrthoFinder output from all 47 species
Azfi_s0038.g026169 CID11 not classified & original description: CDS=99-1196 0.01 OrthoFinder output from all 47 species
Dac_g22950 CID12, ATRBP37, RBP37 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g31891 CID12, ATRBP37, RBP37 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g17641 CID12, ATRBP37, RBP37 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g008973 CID12, ATRBP37, RBP37 not classified & original description: CDS=173-1417 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004560 alpha-L-fucosidase activity IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
MF GO:0015928 fucosidase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 222 285
IPR000504 RRM_dom 125 187
IPR009818 Ataxin-2_C 40 53
No external refs found!