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LOC_Os01g10140.2 (LOC_Os01g10140)


Aliases : LOC_Os01g10140

Description : Probable RNA-dependent RNA polymerase 4 OS=Oryza sativa subsp. japonica (sp|q5qmn4|rdr4_orysj : 1157.0)


Gene families : OG0003530 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003530_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g10140.2
Cluster HCCA: Cluster_95

Target Alias Description ECC score Gene Family Method Actions
AT2G19910 No alias RNA-dependent RNA polymerase family protein 0.09 OrthoFinder output from all 47 species
AT2G19920 No alias RNA-dependent RNA polymerase family protein 0.11 OrthoFinder output from all 47 species
Aop_g12869 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g15431 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.03G035200.1 Ceric.03G035200 not classified & original description: pacid=50572865... 0.03 OrthoFinder output from all 47 species
Ore_g18673 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g36816 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc06g051190.3.1 Solyc06g051190 Probable RNA-dependent RNA polymerase 3 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Solyc12g008420.3.1 Solyc12g008420 Probable RNA-dependent RNA polymerase 5 OS=Arabidopsis... 0.09 OrthoFinder output from all 47 species
Zm00001e008723_P002 Zm00001e008723 Probable RNA-dependent RNA polymerase 3 OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003968 RNA-dependent RNA polymerase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0004497 monooxygenase activity IEP HCCA
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR007855 RNA-dep_RNA_pol_euk-typ 4 425
No external refs found!