Aliases : LOC_Os01g10130
Description : Probable RNA-dependent RNA polymerase 3 OS=Oryza sativa subsp. japonica (sp|q5qmn5|rdr3_orysj : 845.0)
Gene families : OG0003530 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003530_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: LOC_Os01g10130.1 | |
Cluster | HCCA: Cluster_95 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT2G19910 | No alias | RNA-dependent RNA polymerase family protein | 0.15 | OrthoFinder output from all 47 species | |
AT2G19920 | No alias | RNA-dependent RNA polymerase family protein | 0.15 | OrthoFinder output from all 47 species | |
Ala_g22284 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Aop_g12869 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Aop_g36183 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Aspi01Gene26172.t1 | Aspi01Gene26172 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Cba_g15431 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Ceric.03G035200.1 | Ceric.03G035200 | not classified & original description: pacid=50572865... | 0.03 | OrthoFinder output from all 47 species | |
Sam_g36816 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Solyc06g051190.3.1 | Solyc06g051190 | Probable RNA-dependent RNA polymerase 3 OS=Arabidopsis... | 0.02 | OrthoFinder output from all 47 species | |
Solyc12g008420.3.1 | Solyc12g008420 | Probable RNA-dependent RNA polymerase 5 OS=Arabidopsis... | 0.09 | OrthoFinder output from all 47 species | |
Zm00001e008723_P002 | Zm00001e008723 | Probable RNA-dependent RNA polymerase 3 OS=Oryza sativa... | 0.03 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003968 | RNA-dependent RNA polymerase activity | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
MF | GO:0003677 | DNA binding | IEP | HCCA |
MF | GO:0004180 | carboxypeptidase activity | IEP | HCCA |
MF | GO:0004185 | serine-type carboxypeptidase activity | IEP | HCCA |
CC | GO:0005575 | cellular_component | IEP | HCCA |
CC | GO:0005634 | nucleus | IEP | HCCA |
BP | GO:0006355 | regulation of DNA-templated transcription | IEP | HCCA |
BP | GO:0008150 | biological_process | IEP | HCCA |
MF | GO:0008236 | serine-type peptidase activity | IEP | HCCA |
MF | GO:0008238 | exopeptidase activity | IEP | HCCA |
BP | GO:0009719 | response to endogenous stimulus | IEP | HCCA |
BP | GO:0009725 | response to hormone | IEP | HCCA |
BP | GO:0009889 | regulation of biosynthetic process | IEP | HCCA |
BP | GO:0010033 | response to organic substance | IEP | HCCA |
BP | GO:0010215 | cellulose microfibril organization | IEP | HCCA |
BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | HCCA |
MF | GO:0017171 | serine hydrolase activity | IEP | HCCA |
BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
BP | GO:0030198 | extracellular matrix organization | IEP | HCCA |
CC | GO:0031225 | obsolete anchored component of membrane | IEP | HCCA |
BP | GO:0031323 | regulation of cellular metabolic process | IEP | HCCA |
BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | HCCA |
BP | GO:0043062 | extracellular structure organization | IEP | HCCA |
CC | GO:0043226 | organelle | IEP | HCCA |
CC | GO:0043227 | membrane-bounded organelle | IEP | HCCA |
CC | GO:0043229 | intracellular organelle | IEP | HCCA |
CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | HCCA |
BP | GO:0045229 | external encapsulating structure organization | IEP | HCCA |
BP | GO:0050789 | regulation of biological process | IEP | HCCA |
BP | GO:0050794 | regulation of cellular process | IEP | HCCA |
BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0051252 | regulation of RNA metabolic process | IEP | HCCA |
BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
BP | GO:0065007 | biological regulation | IEP | HCCA |
MF | GO:0070008 | serine-type exopeptidase activity | IEP | HCCA |
BP | GO:0080090 | regulation of primary metabolic process | IEP | HCCA |
MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
CC | GO:0110165 | cellular anatomical entity | IEP | HCCA |
MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | HCCA |
BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR007855 | RNA-dep_RNA_pol_euk-typ | 5 | 280 |
No external refs found! |