LOC_Os01g08450.1 (ATRAB1B, RABD2A,...)

Aliases : ATRAB1B, RABD2A, ATRABD2A, ARA5, RA-5, ARA-5, LOC_Os01g08450

Description : D-class RAB GTPase

Gene families : OG0001129 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001129_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os01g08450.1

Target	Alias	Description	ECC score	Gene Family Method
AT1G02130	ATRAB1B, RABD2A,...	RAS 5	0.05	OrthoFinder output from all 47 species
AT5G47200	ATRAB1A, ATRABD2B, RAB1A	RAB GTPase homolog 1A	0.08	OrthoFinder output from all 47 species
Adi_g013330	ATRAB1B, RABD2A,...	D-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g021227	ATRAB1B, RABD2A,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g046907	RAB1C, ATRAB1C, ATRABD2C	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g105164	RAB1C, ATRAB1C, ATRABD2C	D-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Als_g45762	ATRAB1A, ATRABD2B, RAB1A	D-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0027.g023703	ATRAB1A, ATRABD2B, RAB1A	D-class RAB GTPase & original description: CDS=1-693	0.06	OrthoFinder output from all 47 species
Azfi_s0028.g023798	RAB1C, ATRAB1C, ATRABD2C	not classified & original description: CDS=1-543	0.03	OrthoFinder output from all 47 species
Azfi_s0488.g073508	ATRAB1B, RABD2A,...	D-class RAB GTPase & original description: CDS=136-744	0.03	OrthoFinder output from all 47 species
Ceric.38G045700.1	RAB1C, ATRAB1C,...	D-class RAB GTPase & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.39G002700.1	RAB1C, ATRAB1C,...	D-class RAB GTPase & original description:...	0.05	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001408.10	RAB1C, ATRAB1C, ATRABD2C	Vesicle trafficking.regulation of membrane tethering and...	0.05	OrthoFinder output from all 47 species
Cre12.g560150	ATRAB1A, ATRABD2B, RAB1A	Vesicle trafficking.regulation of membrane tethering and...	0.05	OrthoFinder output from all 47 species
Dcu_g23024	RAB1C, ATRAB1C, ATRABD2C	D-class RAB GTPase & original description: none	0.06	OrthoFinder output from all 47 species
Dde_g26656	RAB1C, ATRAB1C, ATRABD2C	D-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g31402	RAB1C, ATRAB1C, ATRABD2C	not classified & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01013868001	RAB1C, ATRAB1C, ATRABD2C	Vesicle trafficking.regulation of membrane tethering and...	0.03	OrthoFinder output from all 47 species
Gb_26449	RAB1C, ATRAB1C, ATRABD2C	D-class RAB GTPase	0.03	OrthoFinder output from all 47 species
Len_g47843	ATRAB1A, ATRABD2B, RAB1A	D-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g06900	ATRAB1B, RABD2A,...	D-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
MA_101924g0020	ATRAB1B, RABD2A,...	D-class RAB GTPase	0.05	OrthoFinder output from all 47 species
Mp3g00710.1	ATRAB1A, ATRABD2B, RAB1A	D-class RAB GTPase	0.09	OrthoFinder output from all 47 species
Msp_g10383	ATRAB1A, ATRABD2B, RAB1A	D-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g40698	ATRAB1B, RABD2A,...	D-class RAB GTPase & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g14298	ATRAB1B, RABD2A,...	D-class RAB GTPase & original description: none	0.04	OrthoFinder output from all 47 species
Pnu_g01990	RAB1C, ATRAB1C, ATRABD2C	D-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Pp3c10_190V3.1	ATRAB1B, RABD2A,...	RAS 5	0.02	OrthoFinder output from all 47 species
Ppi_g05020	RAB1C, ATRAB1C, ATRABD2C	D-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g003026	ATRAB1A, ATRABD2B, RAB1A	not classified & original description: CDS=1-711	0.03	OrthoFinder output from all 47 species
Smo228158	RAB1C, ATRAB1C, ATRABD2C	Vesicle trafficking.regulation of membrane tethering and...	0.03	OrthoFinder output from all 47 species
Solyc05g053940.3.1	ATRAB1B, RABD2A,...	D-class RAB GTPase	0.07	OrthoFinder output from all 47 species
Spa_g31112	RAB1C, ATRAB1C, ATRABD2C	D-class RAB GTPase & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e015303_P001	ATRAB1B, RABD2A,...	D-class RAB GTPase	0.04	OrthoFinder output from all 47 species
Zm00001e023144_P001	ATRAB1B, RABD2A,...	D-class RAB GTPase	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0007034	vacuolar transport	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
CC	GO:0030117	membrane coat	IEP	HCCA
CC	GO:0030118	clathrin coat	IEP	HCCA
CC	GO:0030120	vesicle coat	IEP	HCCA
CC	GO:0030125	clathrin vesicle coat	IEP	HCCA
CC	GO:0030130	clathrin coat of trans-Golgi network vesicle	IEP	HCCA
CC	GO:0030132	clathrin coat of coated pit	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
CC	GO:0098797	plasma membrane protein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001806	Small_GTPase	59	219

External Links

No external refs found!

LOC_Os01g08450.1 (ATRAB1B, RABD2A,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation