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  5. LOC_Os01g07740.1

LOC_Os01g07740.1 (ATDRH1, DRH1, LOC_Os01g07740)


Aliases : ATDRH1, DRH1, LOC_Os01g07740

Description : DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa subsp. japonica (sp|q5vql1|rh14_orysj : 1075.0)


Gene families : OG0000636 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000636_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g07740.1
Cluster HCCA: Cluster_170

Target Alias Description ECC score Gene Family Method Actions
AT5G14610 No alias DEAD box RNA helicase family protein 0.02 OrthoFinder output from all 47 species
Adi_g024667 No alias regulatory RNA helicase *(RH20/RH30) of virus... 0.02 OrthoFinder output from all 47 species
Adi_g057398 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g11417 No alias regulatory RNA helicase *(RH20/RH30) of virus... 0.02 OrthoFinder output from all 47 species
Ceric.06G044900.1 ATDRH1, DRH1,... not classified & original description: pacid=50619771... 0.03 OrthoFinder output from all 47 species
Dcu_g41933 No alias regulatory RNA helicase *(RH20/RH30) of virus... 0.02 OrthoFinder output from all 47 species
Len_g17375 ATDRH1, DRH1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g51090 No alias regulatory RNA helicase *(RH20/RH30) of virus... 0.02 OrthoFinder output from all 47 species
Mp3g07940.1 No alias pre-mRNA splicing regulator (DDX5) 0.02 OrthoFinder output from all 47 species
Nbi_g24575 No alias regulatory RNA helicase *(RH20/RH30) of virus... 0.02 OrthoFinder output from all 47 species
Pnu_g10603 No alias regulatory RNA helicase *(RH20/RH30) of virus... 0.02 OrthoFinder output from all 47 species
Ppi_g62014 No alias regulatory RNA helicase *(RH20/RH30) of virus... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0077.g017597 ATDRH1, DRH1 not classified & original description: CDS=159-3038 0.02 OrthoFinder output from all 47 species
Solyc02g086660.4.1 ATDRH1, DRH1,... ATP-dependent RNA helicase-like protein DB10... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
CC GO:0000776 kinetochore IEP HCCA
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP HCCA
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP HCCA
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP HCCA
BP GO:0006471 obsolete protein ADP-ribosylation IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
CC GO:0031262 Ndc80 complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
CC GO:0099080 supramolecular complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 462 570
IPR011545 DEAD/DEAH_box_helicase_dom 255 425
No external refs found!