LOC_Os01g04730.1 (LOC_Os01g04730)

Aliases : LOC_Os01g04730

Description : component RPL26 of LSU proteome component

Gene families : OG0000884 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000884_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os01g04730.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00065p00088770	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.05	OrthoFinder output from all 47 species
AT3G49910	No alias	Translation protein SH3-like family protein	0.07	OrthoFinder output from all 47 species
AT5G67510	No alias	Translation protein SH3-like family protein	0.11	OrthoFinder output from all 47 species
Adi_g127529	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ala_g33821	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ala_g37339	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Als_g24670	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Aop_g30759	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Aop_g68629	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Azfi_s0003.g008074	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Cba_g20992	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Cba_g70452	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ceric.06G075600.1	Ceric.06G075600	component *(uL24) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Ceric.25G058700.1	Ceric.25G058700	component *(uL24) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000144.60	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.02	OrthoFinder output from all 47 species
Cre01.g040000	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.09	OrthoFinder output from all 47 species
Dac_g26116	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Dac_g26942	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Dac_g27086	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Dcu_g24782	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Dde_g18149	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
GSVIVT01000121001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
GSVIVT01030972001	No alias	60S ribosomal protein L26-1 OS=Arabidopsis thaliana	0.08	OrthoFinder output from all 47 species
Gb_05675	No alias	component RPL26 of LSU proteome component	0.04	OrthoFinder output from all 47 species
Gb_06102	No alias	component RPL26 of LSU proteome component	0.07	OrthoFinder output from all 47 species
Len_g44310	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Lfl_g05207	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Lfl_g28317	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
MA_13141g0010	No alias	component RPL26 of LSU proteome component	0.08	OrthoFinder output from all 47 species
MA_158811g0010	No alias	component RPL26 of LSU proteome component	0.06	OrthoFinder output from all 47 species
Mp2g12870.1	No alias	component RPL26 of LSU proteome component	0.07	OrthoFinder output from all 47 species
Msp_g33144	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ore_g08095	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Pir_g06360	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Pir_g30785	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Pp3c14_25170V3.1	Pp3c14_25170	Translation protein SH3-like family protein	0.07	OrthoFinder output from all 47 species
Pp3c1_25000V3.1	Pp3c1_25000	Translation protein SH3-like family protein	0.03	OrthoFinder output from all 47 species
Pp3c2_15910V3.1	Pp3c2_15910	Translation protein SH3-like family protein	0.02	OrthoFinder output from all 47 species
Ppi_g27585	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ppi_g33996	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ppi_g36832	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ppi_g40592	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001854	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005329	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sam_g05724	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Sam_g12169	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Sam_g30646	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Sam_g48072	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Smo227399	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
Solyc02g064670.1.1	Solyc02g064670	component RPL26 of LSU proteome component	0.04	OrthoFinder output from all 47 species
Solyc02g092430.1.1	Solyc02g092430	component RPL26 of LSU proteome component	0.08	OrthoFinder output from all 47 species
Solyc03g044000.1.1	Solyc03g044000	component RPL26 of LSU proteome component	0.06	OrthoFinder output from all 47 species
Spa_g06853	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Spa_g43201	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Spa_g54872	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Zm00001e016957_P001	Zm00001e016957	component RPL26 of LSU proteome component	0.09	OrthoFinder output from all 47 species
Zm00001e025774_P001	Zm00001e025774	component RPL26 of LSU proteome component	0.11	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015934	large ribosomal subunit	IEA	Interproscan
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003712	transcription coregulator activity	IEP	HCCA
MF	GO:0003713	transcription coactivator activity	IEP	HCCA
CC	GO:0005759	mitochondrial matrix	IEP	HCCA
CC	GO:0005840	ribosome	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0006352	DNA-templated transcription initiation	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
MF	GO:0008097	5S rRNA binding	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
CC	GO:0031974	membrane-enclosed lumen	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043228	non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043233	organelle lumen	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
CC	GO:0070013	intracellular organelle lumen	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005756	Ribosomal_L26/L24P_euk/arc	8	121
IPR005824	KOW	51	82

External Links

No external refs found!

LOC_Os01g04730.1 (LOC_Os01g04730)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation