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  5. LOC_Os01g04280.1

LOC_Os01g04280.1 (LOC_Os01g04280)


Aliases : LOC_Os01g04280

Description : Calmodulin-binding protein 60 B OS=Arabidopsis thaliana (sp|q9fkl6|cb60b_arath : 320.0)


Gene families : OG0000494 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000494_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g04280.1
Cluster HCCA: Cluster_112

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00057p00092720 evm_27.TU.AmTr_v1... Calmodulin-binding protein 60 B OS=Arabidopsis thaliana 0.07 OrthoFinder output from all 47 species
AMTR_s00090p00167270 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AT1G73805 No alias Calmodulin binding protein-like 0.07 OrthoFinder output from all 47 species
AT4G31000 No alias Calmodulin-binding protein 0.03 OrthoFinder output from all 47 species
AT5G26920 CBP60G Cam-binding protein 60-like G 0.05 OrthoFinder output from all 47 species
AT5G62570 No alias Calmodulin binding protein-like 0.06 OrthoFinder output from all 47 species
Adi_g107973 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g16876 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g09924 No alias regulatory protein *(CBP60) of systemic acquired... 0.02 OrthoFinder output from all 47 species
Als_g22997 No alias regulatory protein *(CBP60) of systemic acquired... 0.02 OrthoFinder output from all 47 species
Aop_g69471 No alias regulatory protein *(CBP60) of systemic acquired... 0.02 OrthoFinder output from all 47 species
Aspi01Gene54819.t1 Aspi01Gene54819 regulatory protein *(CBP60) of systemic acquired... 0.03 OrthoFinder output from all 47 species
Azfi_s0116.g046375 No alias regulatory protein *(CBP60) of systemic acquired... 0.04 OrthoFinder output from all 47 species
Ceric.31G029800.1 Ceric.31G029800 regulatory protein *(CBP60) of systemic acquired... 0.05 OrthoFinder output from all 47 species
Ceric.31G030200.1 Ceric.31G030200 regulatory protein *(CBP60) of systemic acquired... 0.03 OrthoFinder output from all 47 species
Dde_g02342 No alias regulatory protein *(CBP60) of systemic acquired... 0.03 OrthoFinder output from all 47 species
Dde_g02963 No alias regulatory protein *(CBP60) of systemic acquired... 0.03 OrthoFinder output from all 47 species
Dde_g30637 No alias regulatory protein *(CBP60) of systemic acquired... 0.02 OrthoFinder output from all 47 species
Dde_g38611 No alias regulatory protein *(CBP60) of systemic acquired... 0.03 OrthoFinder output from all 47 species
Dde_g50936 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g01401 No alias regulatory protein *(CBP60) of systemic acquired... 0.02 OrthoFinder output from all 47 species
Ehy_g03713 No alias regulatory protein *(CBP60) of systemic acquired... 0.05 OrthoFinder output from all 47 species
GSVIVT01008322001 No alias Protein SAR DEFICIENT 1 OS=Arabidopsis thaliana 0.1 OrthoFinder output from all 47 species
GSVIVT01008324001 No alias Protein SAR DEFICIENT 1 OS=Arabidopsis thaliana 0.07 OrthoFinder output from all 47 species
GSVIVT01031210001 No alias Calmodulin-binding protein 60 B OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_39213 No alias Calmodulin-binding protein 60 B OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os11g44200.1 LOC_Os11g44200 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os11g44600.1 LOC_Os11g44600 Calmodulin-binding protein 60 B OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
LOC_Os12g36910.1 LOC_Os12g36910 Calmodulin-binding protein 60 B OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Len_g08454 No alias regulatory protein *(CBP60) of systemic acquired... 0.04 OrthoFinder output from all 47 species
MA_18754g0010 No alias Calmodulin-binding protein 60 D OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_23963g0010 No alias Calmodulin-binding protein 60 B OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Nbi_g10904 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g14631 No alias regulatory protein *(CBP60) of systemic acquired... 0.03 OrthoFinder output from all 47 species
Pir_g29468 No alias regulatory protein *(CBP60) of systemic acquired... 0.03 OrthoFinder output from all 47 species
Ppi_g02308 No alias regulatory protein *(CBP60) of systemic acquired... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0191.g025280 No alias regulatory protein *(CBP60) of systemic acquired... 0.03 OrthoFinder output from all 47 species
Solyc01g100240.3.1 Solyc01g100240 Calmodulin-binding protein 60 C OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Solyc02g079040.3.1 Solyc02g079040 Calmodulin-binding protein 60 B OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Solyc03g113940.4.1 Solyc03g113940 Calmodulin-binding protein 60 A OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
Solyc03g113980.3.1 Solyc03g113980 Calmodulin-binding protein 60 A OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Solyc03g119250.4.1 Solyc03g119250 Protein SAR DEFICIENT 1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc10g009210.4.1 Solyc10g009210 Calmodulin-binding protein 60 B OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Solyc12g036390.2.1 Solyc12g036390 Protein SAR DEFICIENT 1 OS=Arabidopsis thaliana... 0.08 OrthoFinder output from all 47 species
Tin_g07205 No alias regulatory protein *(CBP60) of systemic acquired... 0.05 OrthoFinder output from all 47 species
Zm00001e001388_P002 Zm00001e001388 Calmodulin-binding protein 60 D OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Zm00001e004278_P001 Zm00001e004278 Calmodulin-binding protein 60 C OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Zm00001e016998_P001 Zm00001e016998 Protein SAR DEFICIENT 1 OS=Arabidopsis thaliana... 0.08 OrthoFinder output from all 47 species
Zm00001e038367_P001 Zm00001e038367 Calmodulin-binding protein 60 D OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Zm00001e039693_P002 Zm00001e039693 Calmodulin-binding protein 60 B OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005516 calmodulin binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR012416 CBP60 85 372
No external refs found!