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  5. LOC_Os01g01510.1

LOC_Os01g01510.1 (EMB2777, LOC_Os01g01510)


Aliases : EMB2777, LOC_Os01g01510

Description : no hits & (original description: none)


Gene families : OG0001866 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001866_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g01510.1
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
AT2G43650 EMB2777 Sas10/U3 ribonucleoprotein (Utp) family protein 0.07 OrthoFinder output from all 47 species
Aev_g01292 EMB2777 regulatory protein *(THAL) of rRNA transcription control... 0.02 OrthoFinder output from all 47 species
Aev_g18206 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g11404 EMB2777 regulatory protein *(THAL) of rRNA transcription control... 0.05 OrthoFinder output from all 47 species
Aob_g12731 EMB2777 regulatory protein *(THAL) of rRNA transcription control... 0.02 OrthoFinder output from all 47 species
Aop_g07657 EMB2777 regulatory protein *(THAL) of rRNA transcription control... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00022075.45 EMB2777 No description available 0.04 OrthoFinder output from all 47 species
Cre09.g394399 EMB2777 No description available 0.12 OrthoFinder output from all 47 species
Dcu_g09906 EMB2777 regulatory protein *(THAL) of rRNA transcription control... 0.02 OrthoFinder output from all 47 species
Ehy_g13581 EMB2777 regulatory protein *(THAL) of rRNA transcription control... 0.05 OrthoFinder output from all 47 species
GSVIVT01038137001 EMB2777 No description available 0.05 OrthoFinder output from all 47 species
Gb_25856 EMB2777 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Len_g47069 EMB2777 regulatory protein *(THAL) of rRNA transcription control... 0.05 OrthoFinder output from all 47 species
MA_958867g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp4g18120.1 EMB2777 no hits & (original description: none) 0.11 OrthoFinder output from all 47 species
Smo405212 EMB2777 No description available 0.05 OrthoFinder output from all 47 species
Solyc04g076560.3.1 Solyc04g076560 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Solyc11g072390.2.1 EMB2777, Solyc11g072390 no hits & (original description: none) 0.17 OrthoFinder output from all 47 species
Zm00001e003450_P001 EMB2777, Zm00001e003450 no hits & (original description: none) 0.1 OrthoFinder output from all 47 species
Zm00001e028507_P001 Zm00001e028507 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR007146 Sas10/Utp3/C1D 229 308
IPR018972 Sas10_C_dom 571 643
No external refs found!