ChrSy.fgenesh.mRNA.7 (CRK8)

Aliases : CRK8

Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum (sp|p10978|polx_tobac : 356.0)

Gene families : OG0000011 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: ChrSy.fgenesh.mRNA.7

Target	Alias	Description	ECC score	Gene Family Method
Adi_g012229	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g073916	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g24677	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Aev_g24924	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Aev_g32813	ORF240B	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Aev_g44781	ORF240B	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Aev_g46830	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Aspi01Gene40515.t1	Aspi01Gene40515	not classified & original description: none	0.01	OrthoFinder output from all 47 species
ChrUn.fgenesh.mRNA.36	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.04	OrthoFinder output from all 47 species
Cre03.g183950	CRK8	Retrovirus-related Pol polyprotein from transposon TNT...	0.01	OrthoFinder output from all 47 species
Dcu_g37584	ORF240B	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Gb_03554	No alias	Retrovirus-related Pol polyprotein from transposon RE2...	0.01	OrthoFinder output from all 47 species
Gb_13903	CRK8	Retrovirus-related Pol polyprotein from transposon TNT...	0.01	OrthoFinder output from all 47 species
Nbi_g09352	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g07743	CRK8	not classified & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004523	RNA-DNA hybrid ribonuclease activity	IEP	HCCA
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	IEP	HCCA
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR013103	RVT_2	433	655
IPR001584	Integrase_cat-core	39	142

External Links

No external refs found!

ChrSy.fgenesh.mRNA.7 (CRK8)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation