MA_9379473g0010 (HTA2)

Aliases : HTA2

Description : histone (H2A)

Gene families : OG0000117 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000117_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: MA_9379473g0010

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00168p00048800	HTA12,...	Chromatin organisation.histones.H2A-type histone	0.02	OrthoFinder output from all 47 species
AT5G27670	HTA7	histone H2A 7	0.02	OrthoFinder output from all 47 species
Adi_g019584	HTA6	histone *(H2A) & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g023256	RAT5, HTA1, ATHTA1	histone *(H2A) & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g07967	GAMMA-H2AX,...	histone *(H2A) & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.12G035500.1	GAMMA-H2AX,...	histone *(H2A) & original description: pacid=50600851...	0.04	OrthoFinder output from all 47 species
Gb_34906	RAT5, HTA1, ATHTA1	histone (H2A)	0.03	OrthoFinder output from all 47 species
Lfl_g40852	GAMMA-H2AX,...	histone *(H2A) & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g07187	HTA6	histone *(H2A) & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g43319	GAMMA-H2AX,...	histone *(H2A) & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
CC	GO:0044815	DNA packaging complex	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007125	Histone_H2A/H2B/H3	23	100
IPR032454	Histone_H2A_C	103	136

External Links

No external refs found!