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MA_92056g0010


Description : Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana (sp|q9asp6|hnrpq_arath : 152.0)


Gene families : OG0000677 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000677_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_92056g0010

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00175460 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00027p00222730 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
AMTR_s00087p00144100 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Adi_g068963 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g32982 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g02224 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g14895 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g04897 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g04938 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0182.g056457 No alias not classified & original description: CDS=29-2320 0.02 OrthoFinder output from all 47 species
Ceric.04G058800.1 Ceric.04G058800 not classified & original description: pacid=50631350... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020961.20 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Dac_g16369 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g10166 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g51773 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01018314001 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01022440001 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Gb_14149 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Gb_26190 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Len_g10424 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06685 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g02777 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g05005 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g26284 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g26930 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g39004 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g088800.4.1 Solyc01g088800 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc10g062180.2.1 Solyc10g062180 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Solyc10g062340.2.1 Solyc10g062340 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Spa_g47784 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g12919 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0017150 tRNA dihydrouridine synthase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0106413 dihydrouridine synthase activity IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 228 296
IPR000504 RRM_dom 404 464
IPR000504 RRM_dom 308 374
No external refs found!