MA_877599g0010

Description : linker histone (H1)

Gene families : OG0000310 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000310_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: MA_877599g0010

Target	Alias	Description	ECC score	Gene Family Method
AT1G06760	No alias	winged-helix DNA-binding transcription factor family protein	0.02	OrthoFinder output from all 47 species
Adi_g052669	No alias	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g087695	No alias	linker histone *(H1) & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g04558	HIS1-3	linker histone *(H1) & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g23326	HIS1-3	linker histone *(H1) & original description: none	0.08	OrthoFinder output from all 47 species
Als_g25617	No alias	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g05135	HIS1-3	linker histone *(H1) & original description: none	0.05	OrthoFinder output from all 47 species
Aop_g36461	HIS1-3	linker histone *(H1) & original description: none	0.07	OrthoFinder output from all 47 species
Aspi01Gene11879.t1	HIS1-3, Aspi01Gene11879	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene11880.t1	HIS1-3, Aspi01Gene11880	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020780.71	HIS1-3	No description available	0.04	OrthoFinder output from all 47 species
Cre13.g567450	HIS1-3	Chromatin organisation.histones.H1 linker histone	0.01	OrthoFinder output from all 47 species
Dac_g20797	HIS1-3	linker histone *(H1) & original description: none	0.05	OrthoFinder output from all 47 species
Dcu_g00585	HIS1-3	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01028074001	No alias	Chromatin organisation.histones.H1 linker histone	0.05	OrthoFinder output from all 47 species
Gb_02738	No alias	linker histone (H1)	0.02	OrthoFinder output from all 47 species
Gb_21889	No alias	linker histone (H1)	0.04	OrthoFinder output from all 47 species
LOC_Os07g08710.1	LOC_Os07g08710	linker histone (H1)	0.02	OrthoFinder output from all 47 species
Len_g23782	HIS1-3	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
Mp6g03150.1	HIS1-3	linker histone (H1)	0.02	OrthoFinder output from all 47 species
Msp_g09818	HIS1-3	linker histone *(H1) & original description: none	0.05	OrthoFinder output from all 47 species
Nbi_g04093	HIS1-3	linker histone *(H1) & original description: none	0.02	OrthoFinder output from all 47 species
Pp3c18_14270V3.1	Pp3c18_14270	winged-helix DNA-binding transcription factor family protein	0.02	OrthoFinder output from all 47 species
Ppi_g12516	No alias	linker histone *(H1) & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g11041	No alias	linker histone *(H1) & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g11042	No alias	linker histone *(H1) & original description: none	0.02	OrthoFinder output from all 47 species
Solyc09g083380.4.1	Solyc09g083380	linker histone (H1)	0.03	OrthoFinder output from all 47 species
Spa_g09322	HIS1-3	linker histone *(H1) & original description: none	0.06	OrthoFinder output from all 47 species
Spa_g09323	HIS1-3	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g09324	HIS1-3	linker histone *(H1) & original description: none	0.04	OrthoFinder output from all 47 species
Spa_g18792	HIS1-3	linker histone *(H1) & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g23953	No alias	linker histone *(H1) & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g50934	HIS1-3	linker histone *(H1) & original description: none	0.06	OrthoFinder output from all 47 species
Spa_g50935	HIS1-3	linker histone *(H1) & original description: none	0.05	OrthoFinder output from all 47 species
Tin_g01715	HIS1-3	linker histone *(H1) & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e007189_P001	HIS1-3, Zm00001e007189	linker histone (H1)	0.03	OrthoFinder output from all 47 species
Zm00001e011857_P001	Zm00001e011857	linker histone (H1)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006334	nucleosome assembly	IEA	Interproscan
BP	GO:0006338	chromatin remodeling	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
CC	GO:0018995	host cellular component	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
CC	GO:0033643	host cell part	None	Extended
CC	GO:0033646	host intracellular part	None	Extended
CC	GO:0033647	host intracellular organelle	None	Extended
CC	GO:0033648	host intracellular membrane-bounded organelle	None	Extended
BP	GO:0034728	nucleosome organization	None	Extended
CC	GO:0042025	host cell nucleus	IEA	Interproscan
BP	GO:0043933	protein-containing complex organization	None	Extended
CC	GO:0044815	DNA packaging complex	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0065004	protein-DNA complex assembly	None	Extended
BP	GO:0071824	protein-DNA complex subunit organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR005818	Histone_H1/H5_H15	33	95

External Links

No external refs found!

MA_877599g0010

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation