Aliases : SOC1, AGL20, ATSOC1
Description : no hits & (original description: none)
Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: MA_8447039g0010 | |
Cluster | HCCA: Cluster_36 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
MA_20393g0010 | SOC1, AGL20, ATSOC1 | transcription factor (MADS/AGL) | 0.03 | OrthoFinder output from all 47 species | |
Solyc02g089200.4.1 | AGL2, SEP1,... | transcription factor (MADS/AGL) | 0.03 | OrthoFinder output from all 47 species | |
Solyc07g055920.4.1 | SHP2, AGL5,... | transcription factor (MADS/AGL) | 0.04 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003700 | DNA-binding transcription factor activity | IEA | Interproscan |
CC | GO:0005634 | nucleus | IEA | Interproscan |
BP | GO:0006355 | regulation of DNA-templated transcription | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
MF | GO:0003677 | DNA binding | IEP | HCCA |
MF | GO:0005515 | protein binding | IEP | HCCA |
MF | GO:0046983 | protein dimerization activity | IEP | HCCA |
MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002487 | TF_Kbox | 2 | 67 |
No external refs found! |