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  5. MA_80959g0020

MA_80959g0020 (APUM24, PUM24)


Aliases : APUM24, PUM24

Description : Pumilio homolog 24 OS=Arabidopsis thaliana (sp|q9lrz3|pum24_arath : 90.5)


Gene families : OG0004290 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004290_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_80959g0020

Target Alias Description ECC score Gene Family Method Actions
AT3G16810 APUM24, PUM24 pumilio 24 0.03 OrthoFinder output from all 47 species
Als_g33028 APUM24, PUM24 rRNA processing factor involved in ITS2 rRNA removal... 0.02 OrthoFinder output from all 47 species
Cre12.g528950 APUM24, PUM24 Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
GSVIVT01035090001 APUM24, PUM24 Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 OrthoFinder output from all 47 species
LOC_Os03g61560.1 APUM24, PUM24,... APUM24 rRNA processing factor involved in ITS2 rRNA removal 0.02 OrthoFinder output from all 47 species
Msp_g14632 APUM24, PUM24 rRNA processing factor involved in ITS2 rRNA removal... 0.03 OrthoFinder output from all 47 species
Nbi_g15285 APUM24, PUM24 rRNA processing factor involved in ITS2 rRNA removal... 0.04 OrthoFinder output from all 47 species
Ore_g19282 APUM24, PUM24 rRNA processing factor involved in ITS2 rRNA removal... 0.02 OrthoFinder output from all 47 species
Solyc01g065580.4.1 APUM24, PUM24,... APUM24 rRNA processing factor involved in ITS2 rRNA removal 0.02 OrthoFinder output from all 47 species
Zm00001e006271_P002 APUM24, PUM24,... APUM24 rRNA processing factor involved in ITS2 rRNA removal 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003856 3-dehydroquinate synthase activity IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0009072 aromatic amino acid metabolic process IEP HCCA
BP GO:0009073 aromatic amino acid family biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR012959 CPL_dom 115 144
No external refs found!