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Aliases : PUB23
Description : E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana (sp|q84tg3|pub23_arath : 227.0)
Gene families : OG0000127 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000127_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: MA_779502g0010 | |
| Cluster | HCCA: Cluster_137 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00030p00130440 | CMPG2, ATCMPG2,... | Protein degradation.peptide tagging.Ubiquitin... | 0.04 | OrthoFinder output from all 47 species | |
| AMTR_s00138p00053700 | evm_27.TU.AmTr_v1... | U-box domain-containing protein 21 OS=Arabidopsis thaliana | 0.04 | OrthoFinder output from all 47 species | |
| AT3G02840 | No alias | ARM repeat superfamily protein | 0.04 | OrthoFinder output from all 47 species | |
| AT3G11840 | PUB24 | plant U-box 24 | 0.04 | OrthoFinder output from all 47 species | |
| AT3G52450 | PUB22 | plant U-box 22 | 0.05 | OrthoFinder output from all 47 species | |
| AT5G37490 | No alias | ARM repeat superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| AT5G64660 | CMPG2, ATCMPG2 | CYS, MET, PRO, and GLY protein 2 | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g014414 | PUB25 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g054744 | PUB25 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g077174 | PUB25 | U-Box-group-III E3 ubiquitin ligase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aev_g16119 | PUB25 | E3 ubiquitin ligase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aev_g18167 | PUB26 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aev_g37454 | PUB26 | U-Box-group-III E3 ubiquitin ligase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g10929 | PUB26 | U-Box-group-III E3 ubiquitin ligase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g12714 | PUB25 | U-Box-group-III E3 ubiquitin ligase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g12715 | PUB25 | U-Box-group-III E3 ubiquitin ligase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g23643 | PUB26 | U-Box-group-III E3 ubiquitin ligase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g30969 | PUB25 | U-Box-group-III E3 ubiquitin ligase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g33086 | PUB26 | U-Box-group-III E3 ubiquitin ligase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g37093 | PUB26 | U-Box-group-III E3 ubiquitin ligase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g62359 | PUB26 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g12417 | PUB26 | U-Box-group-III E3 ubiquitin ligase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g20185 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g04412 | PUB23 | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Aop_g04774 | PUB25 | E3 ubiquitin ligase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g18761 | PUB29, ATPUB29 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aop_g39282 | PUB26 | U-Box-group-III E3 ubiquitin ligase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene07828.t1 | PUB26, Aspi01Gene07828 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene15171.t1 | PUB29, ATPUB29,... | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene15674.t1 | PUB26, Aspi01Gene15674 | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Aspi01Gene18444.t1 | PUB23, Aspi01Gene18444 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene18467.t1 | PUB23, Aspi01Gene18467 | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Aspi01Gene19350.t1 | PUB26, Aspi01Gene19350 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene19351.t1 | Aspi01Gene19351 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aspi01Gene19355.t1 | PUB26, Aspi01Gene19355 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene25347.t1 | PUB26, Aspi01Gene25347 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene27391.t1 | PUB26, Aspi01Gene27391 | U-Box-group-III E3 ubiquitin ligase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene33499.t1 | PUB25, Aspi01Gene33499 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene43215.t1 | PUB24, Aspi01Gene43215 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aspi01Gene44311.t1 | PUB22, Aspi01Gene44311 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene44328.t1 | PUB23, Aspi01Gene44328 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene55033.t1 | PUB25, Aspi01Gene55033 | U-Box-group-III E3 ubiquitin ligase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene56365.t1 | PUB25, Aspi01Gene56365 | E3 ubiquitin ligase & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.07G004600.1 | PUB26, Ceric.07G004600 | E3 ubiquitin ligase & original description:... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.10G007700.1 | PUB23, Ceric.10G007700 | not classified & original description: pacid=50612519... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.21G081600.1 | PUB26, Ceric.21G081600 | U-Box-group-III E3 ubiquitin ligase & original... | 0.05 | OrthoFinder output from all 47 species | |
| Ceric.27G047700.1 | PUB8, B80,... | E3 ubiquitin ligase *(PUB8) & original description:... | 0.04 | OrthoFinder output from all 47 species | |
| Dac_g01592 | PUB26 | U-Box-group-III E3 ubiquitin ligase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dac_g07515 | PUB25 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g08418 | PUB23 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g10662 | PUB25 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g01521 | PUB8, B80 | E3 ubiquitin ligase *(PUB8) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g11691 | PUB26 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g31575 | No alias | E3 ubiquitin ligase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g01464 | PUB26 | E3 ubiquitin ligase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dde_g10795 | PUB26 | U-Box-group-III E3 ubiquitin ligase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g03660 | PUB23 | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Ehy_g11323 | PUB25 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g14303 | PUB25 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ehy_g14998 | PUB26 | U-Box-group-III E3 ubiquitin ligase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01011139001 | PUB23 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana | 0.05 | OrthoFinder output from all 47 species | |
| GSVIVT01011140001 | PUB23 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01011616001 | CMPG1, ATCMPG1 | U-box domain-containing protein 20 OS=Arabidopsis thaliana | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01031720001 | PUB26 | U-box domain-containing protein 26 OS=Arabidopsis thaliana | 0.04 | OrthoFinder output from all 47 species | |
| Gb_02627 | No alias | U-box domain-containing protein 21 OS=Arabidopsis... | 0.05 | OrthoFinder output from all 47 species | |
| Gb_02628 | No alias | U-box domain-containing protein 21 OS=Arabidopsis... | 0.04 | OrthoFinder output from all 47 species | |
| Gb_02629 | No alias | U-box domain-containing protein 26 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_13090 | PUB25 | U-box domain-containing protein 25 OS=Arabidopsis... | 0.06 | OrthoFinder output from all 47 species | |
| Gb_16228 | No alias | U-box domain-containing protein 21 OS=Arabidopsis... | 0.05 | OrthoFinder output from all 47 species | |
| Gb_17119 | PUB22 | E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis... | 0.05 | OrthoFinder output from all 47 species | |
| Gb_19502 | PUB23 | U-box domain-containing protein 25 OS=Arabidopsis... | 0.04 | OrthoFinder output from all 47 species | |
| Gb_26429 | PUB26 | U-box domain-containing protein 26 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_27794 | No alias | U-box domain-containing protein 21 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_29851 | No alias | U-box domain-containing protein 21 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os02g50460.1 | LOC_Os02g50460 | U-box domain-containing protein 20 OS=Arabidopsis... | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os03g13740.1 | LOC_Os03g13740 | U-box domain-containing protein 20 OS=Arabidopsis... | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os04g34030.1 | PUB23, LOC_Os04g34030 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os04g49970.1 | PUB23, LOC_Os04g49970 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os06g13870.1 | LOC_Os06g13870 | U-box domain-containing protein 21 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os12g06410.1 | PUB24, LOC_Os12g06410 | E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis... | 0.02 | OrthoFinder output from all 47 species | |
| Len_g01810 | PUB25 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Len_g03802 | PUB26 | E3 ubiquitin ligase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Len_g16219 | No alias | not classified & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Len_g31416 | PUB23 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| MA_126399g0010 | PUB26 | U-box domain-containing protein 25 OS=Arabidopsis... | 0.04 | OrthoFinder output from all 47 species | |
| MA_200041g0010 | PUB25 | U-box domain-containing protein 25 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
| MA_415344g0010 | PUB23 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... | 0.05 | OrthoFinder output from all 47 species | |
| MA_481299g0010 | PUB23 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
| MA_84154g0010 | PUB25 | U-box domain-containing protein 25 OS=Arabidopsis... | 0.04 | OrthoFinder output from all 47 species | |
| MA_8837995g0010 | PUB26 | U-box domain-containing protein 26 OS=Arabidopsis... | 0.05 | OrthoFinder output from all 47 species | |
| MA_95662g0010 | No alias | no hits & (original description: none) | 0.04 | OrthoFinder output from all 47 species | |
| Mp3g22750.1 | PUB26 | U-box domain-containing protein 26 OS=Arabidopsis... | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g11599 | PUB23 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Msp_g38744 | PUB26 | U-Box-group-III E3 ubiquitin ligase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g39476 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g47390 | PUB25 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g06628 | PUB25 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g09373 | PUB26 | U-Box-group-III E3 ubiquitin ligase & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Nbi_g09512 | PUB29, ATPUB29 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g37574 | PUB23 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g08920 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g08921 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ore_g21647 | No alias | E3 ubiquitin ligase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g29206 | PUB25 | E3 ubiquitin ligase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g33878 | PUB26 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g36530 | PUB23 | E3 ubiquitin ligase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g38095 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g42463 | PUB23 | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Pir_g12470 | PUB26 | U-Box-group-III E3 ubiquitin ligase & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Pnu_g12004 | PUB26 | U-Box-group-III E3 ubiquitin ligase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g19356 | PUB26 | U-Box-group-III E3 ubiquitin ligase & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Smo104879 | PUB25 | U-box domain-containing protein 25 OS=Arabidopsis thaliana | 0.02 | OrthoFinder output from all 47 species | |
| Solyc01g005160.4.1 | Solyc01g005160 | U-box domain-containing protein 21 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc01g007000.4.1 | PUB22, Solyc01g007000 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc01g007020.4.1 | PUB23, Solyc01g007020 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc01g007030.3.1 | PUB22, Solyc01g007030 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc01g007050.3.1 | PUB24, Solyc01g007050 | E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis... | 0.04 | OrthoFinder output from all 47 species | |
| Solyc04g008100.3.1 | Solyc04g008100 | U-box domain-containing protein 21 OS=Arabidopsis... | 0.07 | OrthoFinder output from all 47 species | |
| Solyc04g071030.1.1 | Solyc04g071030 | E3 ubiquitin ligase (PUB) | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g47017 | PUB23 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e000999_P001 | Zm00001e000999 | U-box domain-containing protein 20 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e006484_P001 | PUB23, Zm00001e006484 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e007109_P001 | PUB23, Zm00001e007109 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e014752_P001 | PUB23, Zm00001e014752 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e014766_P001 | CMPG2, ATCMPG2,... | E3 ubiquitin ligase (PUB) | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e014779_P001 | PUB26, Zm00001e014779 | U-box domain-containing protein 26 OS=Arabidopsis... | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e015763_P001 | Zm00001e015763 | U-box domain-containing protein 21 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e022698_P001 | PUB26, Zm00001e022698 | U-box domain-containing protein 25 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e036030_P001 | Zm00001e036030 | U-box domain-containing protein 21 OS=Arabidopsis... | 0.04 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000145 | exocyst | IEP | HCCA |
| MF | GO:0003700 | DNA-binding transcription factor activity | IEP | HCCA |
| MF | GO:0004842 | ubiquitin-protein transferase activity | IEP | HCCA |
| BP | GO:0006355 | regulation of DNA-templated transcription | IEP | HCCA |
| BP | GO:0006887 | exocytosis | IEP | HCCA |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | HCCA |
| BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0016567 | protein ubiquitination | IEP | HCCA |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
| MF | GO:0019787 | ubiquitin-like protein transferase activity | IEP | HCCA |
| MF | GO:0019842 | vitamin binding | IEP | HCCA |
| MF | GO:0030170 | pyridoxal phosphate binding | IEP | HCCA |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | HCCA |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | HCCA |
| BP | GO:0032446 | protein modification by small protein conjugation | IEP | HCCA |
| BP | GO:0032940 | secretion by cell | IEP | HCCA |
| BP | GO:0046903 | secretion | IEP | HCCA |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | HCCA |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
| MF | GO:0070279 | vitamin B6 binding | IEP | HCCA |
| BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | HCCA |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | HCCA |
| CC | GO:0099023 | vesicle tethering complex | IEP | HCCA |
| MF | GO:0140110 | transcription regulator activity | IEP | HCCA |
| BP | GO:0140352 | export from cell | IEP | HCCA |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | HCCA |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |