MA_6520706g0010

Description : DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa subsp. japonica (sp|q7y183|rh10_orysj : 154.0)

Gene families : OG0001703 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001703_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: MA_6520706g0010
Cluster	HCCA: Cluster_198

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00020848.20	No alias	DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
MA_8567568g0010	No alias	DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Solyc10g005520.3.1	AtRH36, SWA3,...	SSU processome assembly factor (SWA3)	0.03	OrthoFinder output from all 47 species
Solyc10g007550.3.1	Solyc10g007550	DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Tin_g08077	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e013281_P004	Zm00001e013281	DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	37	111

External Links

No external refs found!