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  5. MA_63194g0010

MA_63194g0010 (APUM12, PUM12)


Aliases : APUM12, PUM12

Description : Pumilio homolog 12 OS=Arabidopsis thaliana (sp|q9lvc3|pum12_arath : 199.0)


Gene families : OG0000858 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000858_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_63194g0010

Target Alias Description ECC score Gene Family Method Actions
Aev_g13809 APUM12, PUM12 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g50820 APUM12, PUM12 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0040.g026500 APUM12, PUM12 not classified & original description: CDS=1-2874 0.01 OrthoFinder output from all 47 species
Ceric.39G043300.1 PUM7, APUM7,... not classified & original description: pacid=50583488... 0.04 OrthoFinder output from all 47 species
Dcu_g01979 APUM12, PUM12 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01033396001 APUM12, PUM12 Pumilio homolog 12 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Len_g13938 PUM7, APUM7 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g05711 APUM12, PUM12 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g17762 APUM12, PUM12 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g55660 PUM7, APUM7 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g06123 APUM12, PUM12 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
CC GO:0017119 Golgi transport complex IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
BP GO:0032259 methylation IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043169 cation binding IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 673 704
IPR001313 Pumilio_RNA-bd_rpt 708 738
IPR001313 Pumilio_RNA-bd_rpt 631 665
IPR001313 Pumilio_RNA-bd_rpt 597 629
No external refs found!