MA_52319g0030

Description : nMAT1/2 type-I mitochondrial RNA splicing factor

Gene families : OG0003627 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003627_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: MA_52319g0030

Target	Alias	Description	ECC score	Gene Family Method
Adi_g021888	No alias	nMAT1/2 type-I mitochondrial RNA splicing factor &...	0.02	OrthoFinder output from all 47 species
Als_g06394	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene58447.t1	Aspi01Gene58447	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.09G034500.1	Ceric.09G034500	not classified & original description: pacid=50588493...	0.02	OrthoFinder output from all 47 species
Ceric.16G062100.1	Ceric.16G062100	nMAT1/2 type-I mitochondrial RNA splicing factor &...	0.05	OrthoFinder output from all 47 species
Ehy_g01601	No alias	nMAT1/2 type-I mitochondrial RNA splicing factor &...	0.03	OrthoFinder output from all 47 species
GSVIVT01023127001	No alias	RNA processing.organelle machineries.RNA...	0.04	OrthoFinder output from all 47 species
LOC_Os10g41790.1	LOC_Os10g41790	nMAT1/2 type-I mitochondrial RNA splicing factor	0.02	OrthoFinder output from all 47 species
Len_g09777	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g35993	No alias	nMAT1/2 type-I mitochondrial RNA splicing factor &...	0.04	OrthoFinder output from all 47 species
Solyc08g077385.1.1	Solyc08g077385	nMAT1/2 type-I mitochondrial RNA splicing factor	0.04	OrthoFinder output from all 47 species
Tin_g13211	No alias	nMAT1/2 type-I mitochondrial RNA splicing factor &...	0.02	OrthoFinder output from all 47 species
Zm00001e000458_P001	Zm00001e000458	nMAT1/2 type-I mitochondrial RNA splicing factor	0.02	OrthoFinder output from all 47 species
Zm00001e011594_P001	Zm00001e011594	nMAT1/2 type-I mitochondrial RNA splicing factor	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005488	binding	IEP	HCCA
CC	GO:0005643	nuclear pore	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR024937	Domain_X	504	596

External Links

No external refs found!

MA_52319g0030

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation