Description : E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana (sp|q9svc6|pub22_arath : 81.6)
Gene families : OG0000127 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000127_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: MA_48004g0010 | |
Cluster | HCCA: Cluster_1095 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00001p00199950 | evm_27.TU.AmTr_v1... | U-box domain-containing protein 31 OS=Arabidopsis thaliana | 0.06 | OrthoFinder output from all 47 species | |
AMTR_s00030p00159240 | PUB23,... | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana | 0.03 | OrthoFinder output from all 47 species | |
AMTR_s00030p00161650 | PUB23,... | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana | 0.03 | OrthoFinder output from all 47 species | |
AMTR_s00069p00038840 | PUB22,... | E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana | 0.03 | OrthoFinder output from all 47 species | |
AT1G66160 | CMPG1, ATCMPG1 | CYS, MET, PRO, and GLY protein 1 | 0.03 | OrthoFinder output from all 47 species | |
AT3G52450 | PUB22 | plant U-box 22 | 0.04 | OrthoFinder output from all 47 species | |
AT5G37490 | No alias | ARM repeat superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
Adi_g014414 | PUB25 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Aev_g02169 | PUB23 | U-Box-group-III E3 ubiquitin ligase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Aev_g02974 | PUB23 | E3 ubiquitin ligase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Aev_g16119 | PUB25 | E3 ubiquitin ligase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Aev_g18167 | PUB26 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Aev_g20058 | PUB26 | U-Box-group-III E3 ubiquitin ligase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Als_g10929 | PUB26 | U-Box-group-III E3 ubiquitin ligase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Als_g12715 | PUB25 | U-Box-group-III E3 ubiquitin ligase & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Als_g23185 | CMPG1, ATCMPG1 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Als_g23643 | PUB26 | U-Box-group-III E3 ubiquitin ligase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Als_g30969 | PUB25 | U-Box-group-III E3 ubiquitin ligase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Als_g41669 | PUB26 | U-Box-group-III E3 ubiquitin ligase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Als_g60936 | PUB25 | E3 ubiquitin ligase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Aob_g08904 | PUB26 | E3 ubiquitin ligase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Aob_g12417 | PUB26 | U-Box-group-III E3 ubiquitin ligase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Aop_g07152 | PUB25 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Aspi01Gene12032.t1 | PUB25, Aspi01Gene12032 | U-Box-group-III E3 ubiquitin ligase & original description: none | 0.08 | OrthoFinder output from all 47 species | |
Aspi01Gene18452.t1 | PUB25, Aspi01Gene18452 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Aspi01Gene18453.t1 | PUB25, Aspi01Gene18453 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Aspi01Gene18467.t1 | PUB23, Aspi01Gene18467 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Aspi01Gene19337.t1 | PUB26, Aspi01Gene19337 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Aspi01Gene19350.t1 | PUB26, Aspi01Gene19350 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Aspi01Gene19351.t1 | Aspi01Gene19351 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Aspi01Gene19355.t1 | PUB26, Aspi01Gene19355 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Aspi01Gene19374.t1 | Aspi01Gene19374 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Aspi01Gene22942.t1 | PUB26, Aspi01Gene22942 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Aspi01Gene25347.t1 | PUB26, Aspi01Gene25347 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Aspi01Gene43214.t1 | PUB24, Aspi01Gene43214 | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
Aspi01Gene43215.t1 | PUB24, Aspi01Gene43215 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Aspi01Gene44311.t1 | PUB22, Aspi01Gene44311 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Aspi01Gene44320.t1 | PUB23, Aspi01Gene44320 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Cba_g27489 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ceric.08G042000.1 | Ceric.08G042000 | E3 ubiquitin ligase & original description:... | 0.03 | OrthoFinder output from all 47 species | |
Dac_g00903 | PUB26 | U-Box-group-III E3 ubiquitin ligase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Dac_g10662 | PUB25 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Dcu_g04484 | PUB25 | E3 ubiquitin ligase & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Dcu_g14166 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Dde_g01464 | PUB26 | E3 ubiquitin ligase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ehy_g06700 | PUB26 | U-Box-group-III E3 ubiquitin ligase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ehy_g16036 | PUB26 | U-Box-group-III E3 ubiquitin ligase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
GSVIVT01026542001 | CMPG2, ATCMPG2 | U-box domain-containing protein 27 OS=Arabidopsis thaliana | 0.03 | OrthoFinder output from all 47 species | |
Gb_19502 | PUB23 | U-box domain-containing protein 25 OS=Arabidopsis... | 0.04 | OrthoFinder output from all 47 species | |
Gb_27794 | No alias | U-box domain-containing protein 21 OS=Arabidopsis... | 0.05 | OrthoFinder output from all 47 species | |
LOC_Os02g34410.1 | PUB25, LOC_Os02g34410 | U-box domain-containing protein 25 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os02g50460.1 | LOC_Os02g50460 | U-box domain-containing protein 20 OS=Arabidopsis... | 0.04 | OrthoFinder output from all 47 species | |
LOC_Os03g13740.1 | LOC_Os03g13740 | U-box domain-containing protein 20 OS=Arabidopsis... | 0.04 | OrthoFinder output from all 47 species | |
LOC_Os04g34030.1 | PUB23, LOC_Os04g34030 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... | 0.07 | OrthoFinder output from all 47 species | |
LOC_Os04g49970.1 | PUB23, LOC_Os04g49970 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os06g13870.1 | LOC_Os06g13870 | U-box domain-containing protein 21 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os12g06410.1 | PUB24, LOC_Os12g06410 | E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
Len_g09678 | PUB25 | E3 ubiquitin ligase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
MA_10432813g0010 | PUB22 | E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis... | 0.04 | OrthoFinder output from all 47 species | |
MA_33190g0010 | PUB23 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
MA_58844g0020 | PUB22 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
Mp3g22740.1 | PUB23 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
Mp7g11000.1 | PUB25 | U-box domain-containing protein 25 OS=Arabidopsis... | 0.02 | OrthoFinder output from all 47 species | |
Nbi_g01051 | PUB26 | U-Box-group-III E3 ubiquitin ligase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Nbi_g06628 | PUB25 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Ore_g08919 | PUB25 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ore_g21834 | PUB25 | U-Box-group-III E3 ubiquitin ligase & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Ore_g29206 | PUB25 | E3 ubiquitin ligase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ore_g33878 | PUB26 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ore_g33879 | PUB26 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ore_g35004 | PUB26 | U-Box-group-III E3 ubiquitin ligase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ore_g42463 | PUB23 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Pnu_g12004 | PUB26 | U-Box-group-III E3 ubiquitin ligase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Pnu_g19356 | PUB26 | U-Box-group-III E3 ubiquitin ligase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ppi_g32476 | PUB25 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Sam_g15131 | No alias | E3 ubiquitin ligase *(PUB8) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Smo403954 | PUB25 | U-box domain-containing protein 25 OS=Arabidopsis thaliana | 0.02 | OrthoFinder output from all 47 species | |
Solyc01g005160.4.1 | Solyc01g005160 | U-box domain-containing protein 21 OS=Arabidopsis... | 0.02 | OrthoFinder output from all 47 species | |
Solyc01g007010.2.1 | PUB22, Solyc01g007010 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... | 0.02 | OrthoFinder output from all 47 species | |
Solyc01g007020.4.1 | PUB23, Solyc01g007020 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... | 0.02 | OrthoFinder output from all 47 species | |
Solyc01g007040.4.1 | PUB22, Solyc01g007040 | E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis... | 0.02 | OrthoFinder output from all 47 species | |
Solyc01g009330.1.1 | PUB22, Solyc01g009330 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... | 0.04 | OrthoFinder output from all 47 species | |
Solyc01g107980.3.1 | PUB26, Solyc01g107980 | U-box domain-containing protein 25 OS=Arabidopsis... | 0.02 | OrthoFinder output from all 47 species | |
Solyc06g074140.1.1 | PUB24, Solyc06g074140 | E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e006484_P001 | PUB23, Zm00001e006484 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e008167_P001 | PUB23, Zm00001e008167 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... | 0.06 | OrthoFinder output from all 47 species | |
Zm00001e014752_P001 | PUB23, Zm00001e014752 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e014766_P001 | CMPG2, ATCMPG2,... | E3 ubiquitin ligase (PUB) | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e014779_P001 | PUB26, Zm00001e014779 | U-box domain-containing protein 26 OS=Arabidopsis... | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e022679_P001 | CMPG2, ATCMPG2,... | U-box domain-containing protein 29 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e022698_P001 | PUB26, Zm00001e022698 | U-box domain-containing protein 25 OS=Arabidopsis... | 0.04 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003712 | transcription coregulator activity | IEP | HCCA |
MF | GO:0003713 | transcription coactivator activity | IEP | HCCA |
MF | GO:0140110 | transcription regulator activity | IEP | HCCA |
No InterPro domains available for this sequence
No external refs found! |