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  5. MA_479847g0010

MA_479847g0010


Description : C3H zinc finger transcription factor


Gene families : OG0000627 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000627_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_479847g0010

Target Alias Description ECC score Gene Family Method Actions
AT3G51950 No alias Zinc finger (CCCH-type) family protein / RNA recognition... 0.03 OrthoFinder output from all 47 species
AT3G52980 No alias Zinc finger (CCCH-type) family protein / RNA recognition... 0.03 OrthoFinder output from all 47 species
AT3G63450 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 OrthoFinder output from all 47 species
Adi_g057680 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g112963 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g125875 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g42686 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g58788 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene04338.t1 Aspi01Gene04338 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0076.g037780 No alias not classified & original description: CDS=1-1272 0.04 OrthoFinder output from all 47 species
Dcu_g19340 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g39714 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g51674 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g02803 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g07818 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01001467001 No alias RNA biosynthesis.transcriptional activation.C3H zinc... 0.04 OrthoFinder output from all 47 species
GSVIVT01031538001 No alias RNA biosynthesis.transcriptional activation.C3H zinc... 0.02 OrthoFinder output from all 47 species
GSVIVT01037782001 No alias RNA biosynthesis.transcriptional activation.C3H zinc... 0.05 OrthoFinder output from all 47 species
LOC_Os03g21140.1 LOC_Os03g21140 C3H zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
LOC_Os07g48410.1 LOC_Os07g48410 C3H zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
Len_g23449 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g07145 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g17242 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g25621 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g30445 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0181.g024872 No alias not classified & original description: CDS=482-2332 0.02 OrthoFinder output from all 47 species
Tin_g11575 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e024022_P001 Zm00001e024022 C3H zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
Zm00001e035876_P001 Zm00001e035876 C3H zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
Zm00001e038256_P001 Zm00001e038256 C3H zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
Zm00001e039148_P001 Zm00001e039148 C3H zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
Zm00001e039250_P004 Zm00001e039250 C3H zinc finger transcription factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 109 129
IPR000504 RRM_dom 230 274
No external refs found!